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7. The Human Phenotype Ontology in 2024: phenotypes around the world. Gargano MA; Matentzoglu N; Coleman B; Addo-Lartey EB; Anagnostopoulos AV; Anderton J; Avillach P; Bagley AM; Bakštein E; Balhoff JP; Baynam G; Bello SM; Berk M; Bertram H; Bishop S; Blau H; Bodenstein DF; Botas P; Boztug K; Čady J; Callahan TJ; Cameron R; Carbon SJ; Castellanos F; Caufield JH; Chan LE; Chute CG; Cruz-Rojo J; Dahan-Oliel N; Davids JR; de Dieuleveult M; de Souza V; de Vries BBA; de Vries E; DePaulo JR; Derfalvi B; Dhombres F; Diaz-Byrd C; Dingemans AJM; Donadille B; Duyzend M; Elfeky R; Essaid S; Fabrizzi C; Fico G; Firth HV; Freudenberg-Hua Y; Fullerton JM; Gabriel DL; Gilmour K; Giordano J; Goes FS; Moses RG; Green I; Griese M; Groza T; Gu W; Guthrie J; Gyori B; Hamosh A; Hanauer M; Hanušová K; He YO; Hegde H; Helbig I; Holasová K; Hoyt CT; Huang S; Hurwitz E; Jacobsen JOB; Jiang X; Joseph L; Keramatian K; King B; Knoflach K; Koolen DA; Kraus ML; Kroll C; Kusters M; Ladewig MS; Lagorce D; Lai MC; Lapunzina P; Laraway B; Lewis-Smith D; Li X; Lucano C; Majd M; Marazita ML; Martinez-Glez V; McHenry TH; McInnis MG; McMurry JA; Mihulová M; Millett CE; Mitchell PB; Moslerová V; Narutomi K; Nematollahi S; Nevado J; Nierenberg AA; Čajbiková NN; Nurnberger JI; Ogishima S; Olson D; Ortiz A; Pachajoa H; Perez de Nanclares G; Peters A; Putman T; Rapp CK; Rath A; Reese J; Rekerle L; Roberts AM; Roy S; Sanders SJ; Schuetz C; Schulte EC; Schulze TG; Schwarz M; Scott K; Seelow D; Seitz B; Shen Y; Similuk MN; Simon ES; Singh B; Smedley D; Smith CL; Smolinsky JT; Sperry S; Stafford E; Stefancsik R; Steinhaus R; Strawbridge R; Sundaramurthi JC; Talapova P; Tenorio Castano JA; Tesner P; Thomas RH; Thurm A; Turnovec M; van Gijn ME; Vasilevsky NA; Vlčková M; Walden A; Wang K; Wapner R; Ware JS; Wiafe AA; Wiafe SA; Wiggins LD; Williams AE; Wu C; Wyrwoll MJ; Xiong H; Yalin N; Yamamoto Y; Yatham LN; Yocum AK; Young AH; Yüksel Z; Zandi PP; Zankl A; Zarante I; Zvolský M; Toro S; Carmody LC; Harris NL; Munoz-Torres MC; Danis D; Mungall CJ; Köhler S; Haendel MA; Robinson PN Nucleic Acids Res; 2024 Jan; 52(D1):D1333-D1346. PubMed ID: 37953324 [TBL] [Abstract][Full Text] [Related]
8. The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Shefchek KA; Harris NL; Gargano M; Matentzoglu N; Unni D; Brush M; Keith D; Conlin T; Vasilevsky N; Zhang XA; Balhoff JP; Babb L; Bello SM; Blau H; Bradford Y; Carbon S; Carmody L; Chan LE; Cipriani V; Cuzick A; Della Rocca M; Dunn N; Essaid S; Fey P; Grove C; Gourdine JP; Hamosh A; Harris M; Helbig I; Hoatlin M; Joachimiak M; Jupp S; Lett KB; Lewis SE; McNamara C; Pendlington ZM; Pilgrim C; Putman T; Ravanmehr V; Reese J; Riggs E; Robb S; Roncaglia P; Seager J; Segerdell E; Similuk M; Storm AL; Thaxon C; Thessen A; Jacobsen JOB; McMurry JA; Groza T; Köhler S; Smedley D; Robinson PN; Mungall CJ; Haendel MA; Munoz-Torres MC; Osumi-Sutherland D Nucleic Acids Res; 2020 Jan; 48(D1):D704-D715. PubMed ID: 31701156 [TBL] [Abstract][Full Text] [Related]
9. Interpretable Clinical Genomics with a Likelihood Ratio Paradigm. Robinson PN; Ravanmehr V; Jacobsen JOB; Danis D; Zhang XA; Carmody LC; Gargano MA; Thaxton CL; ; Karlebach G; Reese J; Holtgrewe M; Köhler S; McMurry JA; Haendel MA; Smedley D Am J Hum Genet; 2020 Sep; 107(3):403-417. PubMed ID: 32755546 [TBL] [Abstract][Full Text] [Related]
10. HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology. Shen F; Peng S; Fan Y; Wen A; Liu S; Wang Y; Wang L; Liu H J Biomed Inform; 2019 Aug; 96():103246. PubMed ID: 31255713 [TBL] [Abstract][Full Text] [Related]
11. Clinical phenotype-based gene prioritization: an initial study using semantic similarity and the human phenotype ontology. Masino AJ; Dechene ET; Dulik MC; Wilkens A; Spinner NB; Krantz ID; Pennington JW; Robinson PN; White PS BMC Bioinformatics; 2014 Jul; 15(1):248. PubMed ID: 25047600 [TBL] [Abstract][Full Text] [Related]
12. The human phenotype ontology. Robinson PN; Mundlos S Clin Genet; 2010 Jun; 77(6):525-34. PubMed ID: 20412080 [TBL] [Abstract][Full Text] [Related]
13. Curation and expansion of Human Phenotype Ontology for defined groups of inborn errors of immunity. Haimel M; Pazmandi J; Heredia RJ; Dmytrus J; Bal SK; Zoghi S; van Daele P; Briggs TA; Wouters C; Bader-Meunier B; Aeschlimann FA; Caorsi R; Eleftheriou D; Hoppenreijs E; Salzer E; Bakhtiar S; Derfalvi B; Saettini F; Kusters MAA; Elfeky R; Trück J; Rivière JG; van der Burg M; Gattorno M; Seidel MG; Burns S; Warnatz K; Hauck F; Brogan P; Gilmour KC; Schuetz C; Simon A; Bock C; Hambleton S; de Vries E; Robinson PN; van Gijn M; Boztug K J Allergy Clin Immunol; 2022 Jan; 149(1):369-378. PubMed ID: 33991581 [TBL] [Abstract][Full Text] [Related]
14. HPOSim: an R package for phenotypic similarity measure and enrichment analysis based on the human phenotype ontology. Deng Y; Gao L; Wang B; Guo X PLoS One; 2015; 10(2):e0115692. PubMed ID: 25664462 [TBL] [Abstract][Full Text] [Related]
15. The Human Phenotype Ontology in 2021. Köhler S; Gargano M; Matentzoglu N; Carmody LC; Lewis-Smith D; Vasilevsky NA; Danis D; Balagura G; Baynam G; Brower AM; Callahan TJ; Chute CG; Est JL; Galer PD; Ganesan S; Griese M; Haimel M; Pazmandi J; Hanauer M; Harris NL; Hartnett MJ; Hastreiter M; Hauck F; He Y; Jeske T; Kearney H; Kindle G; Klein C; Knoflach K; Krause R; Lagorce D; McMurry JA; Miller JA; Munoz-Torres MC; Peters RL; Rapp CK; Rath AM; Rind SA; Rosenberg AZ; Segal MM; Seidel MG; Smedley D; Talmy T; Thomas Y; Wiafe SA; Xian J; Yüksel Z; Helbig I; Mungall CJ; Haendel MA; Robinson PN Nucleic Acids Res; 2021 Jan; 49(D1):D1207-D1217. PubMed ID: 33264411 [TBL] [Abstract][Full Text] [Related]
16. A visual and curatorial approach to clinical variant prioritization and disease gene discovery in genome-wide diagnostics. James RA; Campbell IM; Chen ES; Boone PM; Rao MA; Bainbridge MN; Lupski JR; Yang Y; Eng CM; Posey JE; Shaw CA Genome Med; 2016 Feb; 8(1):13. PubMed ID: 26838676 [TBL] [Abstract][Full Text] [Related]
17. Phen2Disease: a phenotype-driven model for disease and gene prioritization by bidirectional maximum matching semantic similarities. Zhai W; Huang X; Shen N; Zhu S Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37248747 [TBL] [Abstract][Full Text] [Related]
18. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Köhler S; Doelken SC; Mungall CJ; Bauer S; Firth HV; Bailleul-Forestier I; Black GC; Brown DL; Brudno M; Campbell J; FitzPatrick DR; Eppig JT; Jackson AP; Freson K; Girdea M; Helbig I; Hurst JA; Jähn J; Jackson LG; Kelly AM; Ledbetter DH; Mansour S; Martin CL; Moss C; Mumford A; Ouwehand WH; Park SM; Riggs ER; Scott RH; Sisodiya S; Van Vooren S; Wapner RJ; Wilkie AO; Wright CF; Vulto-van Silfhout AT; de Leeuw N; de Vries BB; Washingthon NL; Smith CL; Westerfield M; Schofield P; Ruef BJ; Gkoutos GV; Haendel M; Smedley D; Lewis SE; Robinson PN Nucleic Acids Res; 2014 Jan; 42(Database issue):D966-74. PubMed ID: 24217912 [TBL] [Abstract][Full Text] [Related]
19. The Medical Action Ontology: A tool for annotating and analyzing treatments and clinical management of human disease. Carmody LC; Gargano MA; Toro S; Vasilevsky NA; Adam MP; Blau H; Chan LE; Gomez-Andres D; Horvath R; Kraus ML; Ladewig MS; Lewis-Smith D; Lochmüller H; Matentzoglu NA; Munoz-Torres MC; Schuetz C; Seitz B; Similuk MN; Sparks TN; Strauss T; Swietlik EM; Thompson R; Zhang XA; Mungall CJ; Haendel MA; Robinson PN Med; 2023 Dec; 4(12):913-927.e3. PubMed ID: 37963467 [TBL] [Abstract][Full Text] [Related]