BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

236 related articles for article (PubMed ID: 29996110)

  • 1. A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases.
    Zhang Y; Yang L; Kucherlapati M; Chen F; Hadjipanayis A; Pantazi A; Bristow CA; Lee EA; Mahadeshwar HS; Tang J; Zhang J; Seth S; Lee S; Ren X; Song X; Sun H; Seidman J; Luquette LJ; Xi R; Chin L; Protopopov A; Li W; Park PJ; Kucherlapati R; Creighton CJ
    Cell Rep; 2018 Jul; 24(2):515-527. PubMed ID: 29996110
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
    Zhang Y; Chen F; Creighton CJ
    BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
    [TBL] [Abstract][Full Text] [Related]  

  • 3. High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations.
    Zhang Y; Chen F; Fonseca NA; He Y; Fujita M; Nakagawa H; Zhang Z; Brazma A; ; ; Creighton CJ;
    Nat Commun; 2020 Feb; 11(1):736. PubMed ID: 32024823
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer.
    Akdemir KC; Le VT; Chandran S; Li Y; Verhaak RG; Beroukhim R; Campbell PJ; Chin L; Dixon JR; Futreal PA; ;
    Nat Genet; 2020 Mar; 52(3):294-305. PubMed ID: 32024999
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Rearrangement-mediated cis-regulatory alterations in advanced patient tumors reveal interactions with therapy.
    Zhang Y; Chen F; Pleasance E; Williamson L; Grisdale CJ; Titmuss E; Laskin J; Jones SJM; Cortes-Ciriano I; Marra MA; Creighton CJ
    Cell Rep; 2021 Nov; 37(7):110023. PubMed ID: 34788622
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers.
    Alaei-Mahabadi B; Bhadury J; Karlsson JW; Nilsson JA; Larsson E
    Proc Natl Acad Sci U S A; 2016 Nov; 113(48):13768-13773. PubMed ID: 27856756
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking.
    Weischenfeldt J; Dubash T; Drainas AP; Mardin BR; Chen Y; Stütz AM; Waszak SM; Bosco G; Halvorsen AR; Raeder B; Efthymiopoulos T; Erkek S; Siegl C; Brenner H; Brustugun OT; Dieter SM; Northcott PA; Petersen I; Pfister SM; Schneider M; Solberg SK; Thunissen E; Weichert W; Zichner T; Thomas R; Peifer M; Helland A; Ball CR; Jechlinger M; Sotillo R; Glimm H; Korbel JO
    Nat Genet; 2017 Jan; 49(1):65-74. PubMed ID: 27869826
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma.
    Cheng C; Zhou Y; Li H; Xiong T; Li S; Bi Y; Kong P; Wang F; Cui H; Li Y; Fang X; Yan T; Li Y; Wang J; Yang B; Zhang L; Jia Z; Song B; Hu X; Yang J; Qiu H; Zhang G; Liu J; Xu E; Shi R; Zhang Y; Liu H; He C; Zhao Z; Qian Y; Rong R; Han Z; Zhang Y; Luo W; Wang J; Peng S; Yang X; Li X; Li L; Fang H; Liu X; Ma L; Chen Y; Guo S; Chen X; Xi Y; Li G; Liang J; Yang X; Guo J; Jia J; Li Q; Cheng X; Zhan Q; Cui Y
    Am J Hum Genet; 2016 Feb; 98(2):256-74. PubMed ID: 26833333
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Global impact of somatic structural variation on the cancer proteome.
    Chen F; Zhang Y; Chandrashekar DS; Varambally S; Creighton CJ
    Nat Commun; 2023 Sep; 14(1):5637. PubMed ID: 37704602
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns.
    Notta F; Chan-Seng-Yue M; Lemire M; Li Y; Wilson GW; Connor AA; Denroche RE; Liang SB; Brown AM; Kim JC; Wang T; Simpson JT; Beck T; Borgida A; Buchner N; Chadwick D; Hafezi-Bakhtiari S; Dick JE; Heisler L; Hollingsworth MA; Ibrahimov E; Jang GH; Johns J; Jorgensen LG; Law C; Ludkovski O; Lungu I; Ng K; Pasternack D; Petersen GM; Shlush LI; Timms L; Tsao MS; Wilson JM; Yung CK; Zogopoulos G; Bartlett JM; Alexandrov LB; Real FX; Cleary SP; Roehrl MH; McPherson JD; Stein LD; Hudson TJ; Campbell PJ; Gallinger S
    Nature; 2016 Oct; 538(7625):378-382. PubMed ID: 27732578
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent
    Ooi WF; Nargund AM; Lim KJ; Zhang S; Xing M; Mandoli A; Lim JQ; Ho SWT; Guo Y; Yao X; Lin SJ; Nandi T; Xu C; Ong X; Lee M; Tan AL; Lam YN; Teo JX; Kaneda A; White KP; Lim WK; Rozen SG; Teh BT; Li S; Skanderup AJ; Tan P
    Gut; 2020 Jun; 69(6):1039-1052. PubMed ID: 31542774
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genomic basis for RNA alterations in cancer.
    ; Calabrese C; Davidson NR; Demircioğlu D; Fonseca NA; He Y; Kahles A; Lehmann KV; Liu F; Shiraishi Y; Soulette CM; Urban L; Greger L; Li S; Liu D; Perry MD; Xiang Q; Zhang F; Zhang J; Bailey P; Erkek S; Hoadley KA; Hou Y; Huska MR; Kilpinen H; Korbel JO; Marin MG; Markowski J; Nandi T; Pan-Hammarström Q; Pedamallu CS; Siebert R; Stark SG; Su H; Tan P; Waszak SM; Yung C; Zhu S; Awadalla P; Creighton CJ; Meyerson M; Ouellette BFF; Wu K; Yang H; ; Brazma A; Brooks AN; Göke J; Rätsch G; Schwarz RF; Stegle O; Zhang Z;
    Nature; 2020 Feb; 578(7793):129-136. PubMed ID: 32025019
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification of driver genes regulating immune cell infiltration in cervical cancer by multiple omics integration.
    Wen Y; Zhang S; Yang J; Guo D
    Biomed Pharmacother; 2019 Dec; 120():109546. PubMed ID: 31675687
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution.
    Bignell GR; Santarius T; Pole JC; Butler AP; Perry J; Pleasance E; Greenman C; Menzies A; Taylor S; Edkins S; Campbell P; Quail M; Plumb B; Matthews L; McLay K; Edwards PA; Rogers J; Wooster R; Futreal PA; Stratton MR
    Genome Res; 2007 Sep; 17(9):1296-303. PubMed ID: 17675364
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study.
    Zhao M; Zhao Z
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):532. PubMed ID: 27556634
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genomic determinants of somatic copy number alterations across human cancers.
    Zhang Y; Xu H; Frishman D
    Hum Mol Genet; 2016 Mar; 25(5):1019-30. PubMed ID: 26732428
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identification of complex genomic rearrangements in cancers using CouGaR.
    Dzamba M; Ramani AK; Buczkowicz P; Jiang Y; Yu M; Hawkins C; Brudno M
    Genome Res; 2017 Jan; 27(1):107-117. PubMed ID: 27986820
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
    Rodriguez-Martin B; Alvarez EG; Baez-Ortega A; Zamora J; Supek F; Demeulemeester J; Santamarina M; Ju YS; Temes J; Garcia-Souto D; Detering H; Li Y; Rodriguez-Castro J; Dueso-Barroso A; Bruzos AL; Dentro SC; Blanco MG; Contino G; Ardeljan D; Tojo M; Roberts ND; Zumalave S; Edwards PA; Weischenfeldt J; Puiggròs M; Chong Z; Chen K; Lee EA; Wala JA; Raine KM; Butler A; Waszak SM; Navarro FCP; Schumacher SE; Monlong J; Maura F; Bolli N; Bourque G; Gerstein M; Park PJ; Wedge DC; Beroukhim R; Torrents D; Korbel JO; Martincorena I; Fitzgerald RC; Van Loo P; Kazazian HH; Burns KH; ; Campbell PJ; Tubio JMC;
    Nat Genet; 2020 Mar; 52(3):306-319. PubMed ID: 32024998
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Global impact of somatic structural variation on the DNA methylome of human cancers.
    Zhang Y; Yang L; Kucherlapati M; Hadjipanayis A; Pantazi A; Bristow CA; Lee EA; Mahadeshwar HS; Tang J; Zhang J; Seth S; Lee S; Ren X; Song X; Sun H; Seidman J; Luquette LJ; Xi R; Chin L; Protopopov A; Park PJ; Kucherlapati R; Creighton CJ
    Genome Biol; 2019 Oct; 20(1):209. PubMed ID: 31610796
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Cancer regulatory variation.
    Hennessey RC; Brown KM
    Curr Opin Genet Dev; 2021 Feb; 66():41-49. PubMed ID: 33422949
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.