BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 30016409)

  • 1. Reproducible and replicable comparisons using SummarizedBenchmark.
    Kimes PK; Reyes A
    Bioinformatics; 2019 Jan; 35(1):137-139. PubMed ID: 30016409
    [TBL] [Abstract][Full Text] [Related]  

  • 2. benchdamic: benchmarking of differential abundance methods for microbiome data.
    Calgaro M; Romualdi C; Risso D; Vitulo N
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36477500
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis.
    Yu G; Wang LG; Yan GR; He QY
    Bioinformatics; 2015 Feb; 31(4):608-9. PubMed ID: 25677125
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
    Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
    Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ndexr-an R package to interface with the network data exchange.
    Auer F; Hammoud Z; Ishkin A; Pratt D; Ideker T; Kramer F
    Bioinformatics; 2018 Feb; 34(4):716-717. PubMed ID: 29087446
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.
    Wang B; Cunningham JM; Yang XH
    Bioinformatics; 2015 Sep; 31(18):3043-5. PubMed ID: 25979472
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways.
    Rodriguez-Martinez A; Ayala R; Posma JM; Neves AL; Gauguier D; Nicholson JK; Dumas ME
    Bioinformatics; 2017 Mar; 33(5):773-775. PubMed ID: 28011775
    [TBL] [Abstract][Full Text] [Related]  

  • 8. synbreed: a framework for the analysis of genomic prediction data using R.
    Wimmer V; Albrecht T; Auinger HJ; Schön CC
    Bioinformatics; 2012 Aug; 28(15):2086-7. PubMed ID: 22689388
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RImmPort: an R/Bioconductor package that enables ready-for-analysis immunology research data.
    Shankar RD; Bhattacharya S; Jujjavarapu C; Andorf S; Wiser JA; Butte AJ
    Bioinformatics; 2017 Apr; 33(7):1101-1103. PubMed ID: 28057685
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.
    Kulkarni N; Alessandrì L; Panero R; Arigoni M; Olivero M; Ferrero G; Cordero F; Beccuti M; Calogero RA
    BMC Bioinformatics; 2018 Oct; 19(Suppl 10):349. PubMed ID: 30367595
    [TBL] [Abstract][Full Text] [Related]  

  • 11. VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.
    Morganella S; Ceccarelli M
    Bioinformatics; 2012 Oct; 28(19):2512-4. PubMed ID: 22815357
    [TBL] [Abstract][Full Text] [Related]  

  • 12. flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.
    Malek M; Taghiyar MJ; Chong L; Finak G; Gottardo R; Brinkman RR
    Bioinformatics; 2015 Feb; 31(4):606-7. PubMed ID: 25378466
    [TBL] [Abstract][Full Text] [Related]  

  • 13. QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.
    Zhang Y; Xie J; Yang J; Fennell A; Zhang C; Ma Q
    Bioinformatics; 2017 Feb; 33(3):450-452. PubMed ID: 28172469
    [TBL] [Abstract][Full Text] [Related]  

  • 14. diffuStats: an R package to compute diffusion-based scores on biological networks.
    Picart-Armada S; Thompson WK; Buil A; Perera-Lluna A
    Bioinformatics; 2018 Feb; 34(3):533-534. PubMed ID: 29029016
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ensembldb: an R package to create and use Ensembl-based annotation resources.
    Rainer J; Gatto L; Weichenberger CX
    Bioinformatics; 2019 Sep; 35(17):3151-3153. PubMed ID: 30689724
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RaMWAS: fast methylome-wide association study pipeline for enrichment platforms.
    Shabalin AA; Hattab MW; Clark SL; Chan RF; Kumar G; Aberg KA; van den Oord EJCG
    Bioinformatics; 2018 Jul; 34(13):2283-2285. PubMed ID: 29447401
    [TBL] [Abstract][Full Text] [Related]  

  • 17. missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
    Phipson B; Maksimovic J; Oshlack A
    Bioinformatics; 2016 Jan; 32(2):286-8. PubMed ID: 26424855
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ggCyto: next generation open-source visualization software for cytometry.
    Van P; Jiang W; Gottardo R; Finak G
    Bioinformatics; 2018 Nov; 34(22):3951-3953. PubMed ID: 29868771
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.
    Beccuti M; Cordero F; Arigoni M; Panero R; Amparore EG; Donatelli S; Calogero RA
    Bioinformatics; 2018 Mar; 34(5):871-872. PubMed ID: 29069297
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines.
    Hu Q; Hutson A; Liu S; Morgan M; Liu Q
    Bioinformatics; 2021 Oct; 37(19):3351-3352. PubMed ID: 33772584
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.