435 related articles for article (PubMed ID: 30018084)
1. Rapid Low-Cost Assembly of the
Solares EA; Chakraborty M; Miller DE; Kalsow S; Hall K; Perera AG; Emerson JJ; Hawley RS
G3 (Bethesda); 2018 Oct; 8(10):3143-3154. PubMed ID: 30018084
[TBL] [Abstract][Full Text] [Related]
2. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM
Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459
[TBL] [Abstract][Full Text] [Related]
3. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage.
Chakraborty M; Baldwin-Brown JG; Long AD; Emerson JJ
Nucleic Acids Res; 2016 Nov; 44(19):e147. PubMed ID: 27458204
[TBL] [Abstract][Full Text] [Related]
4. ONT-Based Alternative Assemblies Impact on the Annotations of Unique versus Repetitive Features in the Genome of a Romanian Strain of
Bologa AM; Stoica I; Ratiu AC; Constantin ND; Ecovoiu AA
Int J Mol Sci; 2022 Nov; 23(23):. PubMed ID: 36499217
[TBL] [Abstract][Full Text] [Related]
5. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
6. Chromosome-level hybrid de novo genome assemblies as an attainable option for nonmodel insects.
Jaworski CC; Allan CW; Matzkin LM
Mol Ecol Resour; 2020 Sep; 20(5):1277-1293. PubMed ID: 32329220
[TBL] [Abstract][Full Text] [Related]
7. Highly contiguous assemblies of 101 drosophilid genomes.
Kim BY; Wang JR; Miller DE; Barmina O; Delaney E; Thompson A; Comeault AA; Peede D; D'Agostino ERR; Pelaez J; Aguilar JM; Haji D; Matsunaga T; Armstrong EE; Zych M; Ogawa Y; Stamenković-Radak M; Jelić M; Veselinović MS; Tanasković M; Erić P; Gao JJ; Katoh TK; Toda MJ; Watabe H; Watada M; Davis JS; Moyle LC; Manoli G; Bertolini E; Košťál V; Hawley RS; Takahashi A; Jones CD; Price DK; Whiteman N; Kopp A; Matute DR; Petrov DA
Elife; 2021 Jul; 10():. PubMed ID: 34279216
[TBL] [Abstract][Full Text] [Related]
8. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
[TBL] [Abstract][Full Text] [Related]
9. Highly Contiguous Genome Assemblies of 15
Miller DE; Staber C; Zeitlinger J; Hawley RS
G3 (Bethesda); 2018 Oct; 8(10):3131-3141. PubMed ID: 30087105
[TBL] [Abstract][Full Text] [Related]
10. Benchmarking of next and third generation sequencing technologies and their associated algorithms for
Gavrielatos M; Kyriakidis K; Spandidos DA; Michalopoulos I
Mol Med Rep; 2021 Apr; 23(4):. PubMed ID: 33537807
[TBL] [Abstract][Full Text] [Related]
11. MinION-based long-read sequencing and assembly extends the
Tyson JR; O'Neil NJ; Jain M; Olsen HE; Hieter P; Snutch TP
Genome Res; 2018 Feb; 28(2):266-274. PubMed ID: 29273626
[TBL] [Abstract][Full Text] [Related]
12. Genomic Structural Variations Within Five Continental Populations of
Long E; Evans C; Chaston J; Udall JA
G3 (Bethesda); 2018 Oct; 8(10):3247-3253. PubMed ID: 30111620
[TBL] [Abstract][Full Text] [Related]
13. Nanopore sequencing and assembly of a human genome with ultra-long reads.
Jain M; Koren S; Miga KH; Quick J; Rand AC; Sasani TA; Tyson JR; Beggs AD; Dilthey AT; Fiddes IT; Malla S; Marriott H; Nieto T; O'Grady J; Olsen HE; Pedersen BS; Rhie A; Richardson H; Quinlan AR; Snutch TP; Tee L; Paten B; Phillippy AM; Simpson JT; Loman NJ; Loose M
Nat Biotechnol; 2018 Apr; 36(4):338-345. PubMed ID: 29431738
[TBL] [Abstract][Full Text] [Related]
14. Nanopore sequencing and Hi-C scaffolding provide insight into the evolutionary dynamics of transposable elements and piRNA production in wild strains of Drosophila melanogaster.
Ellison CE; Cao W
Nucleic Acids Res; 2020 Jan; 48(1):290-303. PubMed ID: 31754714
[TBL] [Abstract][Full Text] [Related]
15. High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers.
Molina-Mora JA; Campos-Sánchez R; Rodríguez C; Shi L; García F
Sci Rep; 2020 Jan; 10(1):1392. PubMed ID: 31996747
[TBL] [Abstract][Full Text] [Related]
16. Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis.
Baeza JA; García-De León FJ
BMC Genomics; 2022 Apr; 23(1):320. PubMed ID: 35459089
[TBL] [Abstract][Full Text] [Related]
17. Chromosome-level de novo assembly of Coprinopsis cinerea A43mut B43mut pab1-1 #326 and genetic variant identification of mutants using Nanopore MinION sequencing.
Xie Y; Zhong Y; Chang J; Kwan HS
Fungal Genet Biol; 2021 Jan; 146():103485. PubMed ID: 33253902
[TBL] [Abstract][Full Text] [Related]
18. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
[TBL] [Abstract][Full Text] [Related]
19. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.
McCoy RC; Taylor RW; Blauwkamp TA; Kelley JL; Kertesz M; Pushkarev D; Petrov DA; Fiston-Lavier AS
PLoS One; 2014; 9(9):e106689. PubMed ID: 25188499
[TBL] [Abstract][Full Text] [Related]
20. Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation.
Pollo SMJ; Reiling SJ; Wit J; Workentine ML; Guy RA; Batoff GW; Yee J; Dixon BR; Wasmuth JD
Parasit Vectors; 2020 Feb; 13(1):108. PubMed ID: 32111234
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]