These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
138 related articles for article (PubMed ID: 30019778)
1. Singular value decomposition for the correlation of atomic fluctuations with arbitrary angle. Yu M; Ma X; Cao H; Chong B; Lai L; Liu Z Proteins; 2018 Oct; 86(10):1075-1087. PubMed ID: 30019778 [TBL] [Abstract][Full Text] [Related]
2. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery. Kalescky R; Zhou H; Liu J; Tao P PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535 [TBL] [Abstract][Full Text] [Related]
3. Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning. Gerek ZN; Ozkan SB PLoS Comput Biol; 2011 Oct; 7(10):e1002154. PubMed ID: 21998559 [TBL] [Abstract][Full Text] [Related]
4. Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E. Zhang J; Sapienza PJ; Ke H; Chang A; Hengel SR; Wang H; Phillips GN; Lee AL Biochemistry; 2010 Nov; 49(43):9280-91. PubMed ID: 20839809 [TBL] [Abstract][Full Text] [Related]
5. The binding affinity of PTPN13's tandem PDZ2/3 domain is allosterically modulated. Dicks M; Kock G; Kohl B; Zhong X; Pütz S; Heumann R; Erdmann KS; Stoll R BMC Mol Cell Biol; 2019 Jul; 20(1):23. PubMed ID: 31286859 [TBL] [Abstract][Full Text] [Related]
6. An allosteric intramolecular PDZ-PDZ interaction modulates PTP-BL PDZ2 binding specificity. van den Berk LC; Landi E; Walma T; Vuister GW; Dente L; Hendriks WJ Biochemistry; 2007 Nov; 46(47):13629-37. PubMed ID: 17979300 [TBL] [Abstract][Full Text] [Related]
7. Fluctuation correlations as major determinants of structure- and dynamics-driven allosteric effects. Yu M; Chen Y; Wang ZL; Liu Z Phys Chem Chem Phys; 2019 Feb; 21(9):5200-5214. PubMed ID: 30775734 [TBL] [Abstract][Full Text] [Related]
8. Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions. Hacisuleyman A; Erman B Proteins; 2017 Jun; 85(6):1056-1064. PubMed ID: 28241380 [TBL] [Abstract][Full Text] [Related]
9. Coupling dynamics and evolutionary information with structure to identify protein regulatory and functional binding sites. Mishra SK; Kandoi G; Jernigan RL Proteins; 2019 Oct; 87(10):850-868. PubMed ID: 31141211 [TBL] [Abstract][Full Text] [Related]
10. Role of Terahertz (THz) Fluctuations in the Allosteric Properties of the PDZ Domains. Conti Nibali V; Morra G; Havenith M; Colombo G J Phys Chem B; 2017 Nov; 121(44):10200-10208. PubMed ID: 28991478 [TBL] [Abstract][Full Text] [Related]
11. Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps. Hayatshahi HS; Ahuactzin E; Tao P; Wang S; Liu J J Chem Inf Model; 2019 Nov; 59(11):4691-4705. PubMed ID: 31589429 [TBL] [Abstract][Full Text] [Related]
12. Signaling pathways of PDZ2 domain: a molecular dynamics interaction correlation analysis. Kong Y; Karplus M Proteins; 2009 Jan; 74(1):145-54. PubMed ID: 18618698 [TBL] [Abstract][Full Text] [Related]
13. Real-time observation of ligand-induced allosteric transitions in a PDZ domain. Bozovic O; Zanobini C; Gulzar A; Jankovic B; Buhrke D; Post M; Wolf S; Stock G; Hamm P Proc Natl Acad Sci U S A; 2020 Oct; 117(42):26031-26039. PubMed ID: 33020277 [TBL] [Abstract][Full Text] [Related]
14. Long-Range Conformational Response of a PDZ Domain to Ligand Binding and Release: A Molecular Dynamics Study. Lu C; Knecht V; Stock G J Chem Theory Comput; 2016 Feb; 12(2):870-8. PubMed ID: 26683494 [TBL] [Abstract][Full Text] [Related]
15. Motions of Allosteric and Orthosteric Ligand-Binding Sites in Proteins are Highly Correlated. Ma X; Meng H; Lai L J Chem Inf Model; 2016 Sep; 56(9):1725-33. PubMed ID: 27580047 [TBL] [Abstract][Full Text] [Related]
16. Allostery in protein domains reflects a balance of steric and hydrophobic effects. England JL Structure; 2011 Jul; 19(7):967-75. PubMed ID: 21742263 [TBL] [Abstract][Full Text] [Related]
17. Allosteric sites can be identified based on the residue-residue interaction energy difference. Ma X; Qi Y; Lai L Proteins; 2015 Aug; 83(8):1375-84. PubMed ID: 25185787 [TBL] [Abstract][Full Text] [Related]
18. Allosteric communication pathways and thermal rectification in PDZ-2 protein: a computational study. Miño-Galaz GA J Phys Chem B; 2015 May; 119(20):6179-89. PubMed ID: 25933631 [TBL] [Abstract][Full Text] [Related]
19. Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e. Cilia E; Vuister GW; Lenaerts T PLoS Comput Biol; 2012; 8(11):e1002794. PubMed ID: 23209399 [TBL] [Abstract][Full Text] [Related]
20. Atomic resolution protein allostery from the multi-state structure of a PDZ domain. Ashkinadze D; Kadavath H; Pokharna A; Chi CN; Friedmann M; Strotz D; Kumari P; Minges M; Cadalbert R; Königl S; Güntert P; Vögeli B; Riek R Nat Commun; 2022 Oct; 13(1):6232. PubMed ID: 36266302 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]