These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

305 related articles for article (PubMed ID: 30021829)

  • 1. Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data.
    Newman JRB; Concannon P; Tardaguila M; Conesa A; McIntyre LM
    G3 (Bethesda); 2018 Aug; 8(9):2923-2940. PubMed ID: 30021829
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
    Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
    Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A
    Ramberg S; Høyheim B; Østbye TK; Andreassen R
    Front Genet; 2021; 12():656334. PubMed ID: 33986770
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A robust method for transcript quantification with RNA-seq data.
    Huang Y; Hu Y; Jones CD; MacLeod JN; Chiang DY; Liu Y; Prins JF; Liu J
    J Comput Biol; 2013 Mar; 20(3):167-87. PubMed ID: 23461570
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.
    Zhang R; Kuo R; Coulter M; Calixto CPG; Entizne JC; Guo W; Marquez Y; Milne L; Riegler S; Matsui A; Tanaka M; Harvey S; Gao Y; Wießner-Kroh T; Paniagua A; Crespi M; Denby K; Hur AB; Huq E; Jantsch M; Jarmolowski A; Koester T; Laubinger S; Li QQ; Gu L; Seki M; Staiger D; Sunkar R; Szweykowska-Kulinska Z; Tu SL; Wachter A; Waugh R; Xiong L; Zhang XN; Conesa A; Reddy ASN; Barta A; Kalyna M; Brown JWS
    Genome Biol; 2022 Jul; 23(1):149. PubMed ID: 35799267
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms.
    Wang Y; Li X; Wang C; Gao L; Wu Y; Ni X; Sun J; Jiang J
    BMC Genomics; 2021 Sep; 22(1):690. PubMed ID: 34551715
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies.
    Ren Y; Tseng E; Smith TPL; Hiendleder S; Williams JL; Low WY
    BMC Genomics; 2023 Mar; 24(1):108. PubMed ID: 36915055
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events.
    Zhang SJ; Wang C; Yan S; Fu A; Luan X; Li Y; Sunny Shen Q; Zhong X; Chen JY; Wang X; Chin-Ming Tan B; He A; Li CY
    Mol Biol Evol; 2017 Oct; 34(10):2453-2468. PubMed ID: 28957512
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data.
    Beiki H; Liu H; Huang J; Manchanda N; Nonneman D; Smith TPL; Reecy JM; Tuggle CK
    BMC Genomics; 2019 May; 20(1):344. PubMed ID: 31064321
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
    Seok J; Xu W; Jiang H; Davis RW; Xiao W
    PLoS One; 2012; 7(2):e31440. PubMed ID: 22312447
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.
    Singh D; Orellana CF; Hu Y; Jones CD; Liu Y; Chiang DY; Liu J; Prins JF
    Bioinformatics; 2011 Oct; 27(19):2633-40. PubMed ID: 21824971
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome.
    Liu X; Mei W; Soltis PS; Soltis DE; Barbazuk WB
    Mol Ecol Resour; 2017 Nov; 17(6):1243-1256. PubMed ID: 28316149
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq.
    Huang Y; Hu Y; Liu J
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S3. PubMed ID: 25252653
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing.
    Piriyapongsa J; Kaewprommal P; Vaiwsri S; Anuntakarun S; Wirojsirasak W; Punpee P; Klomsa-Ard P; Shaw PJ; Pootakham W; Yoocha T; Sangsrakru D; Tangphatsornruang S; Tongsima S; Tragoonrung S
    PeerJ; 2018; 6():e5818. PubMed ID: 30397543
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe.
    Feng S; Xu M; Liu F; Cui C; Zhou B
    BMC Plant Biol; 2019 Aug; 19(1):365. PubMed ID: 31426739
    [TBL] [Abstract][Full Text] [Related]  

  • 18. EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
    Bevilacqua V; Pietroleonardo N; Giannino E; Stroppa F; Simone D; Pesole G; Picardi E
    BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S7. PubMed ID: 25474441
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.
    Stein S; Lu ZX; Bahrami-Samani E; Park JW; Xing Y
    Nucleic Acids Res; 2015 Dec; 43(22):10612-22. PubMed ID: 26578562
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Relative Abundance of Transcripts (
    Froussios K; Mourão K; Simpson G; Barton G; Schurch N
    F1000Res; 2019; 8():213. PubMed ID: 30906538
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.