BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 30039363)

  • 1. Whole-Genome Shotgun Sequence CNV Detection Using Read Depth.
    Kahveci F; Alkan C
    Methods Mol Biol; 2018; 1833():61-72. PubMed ID: 30039363
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures.
    Bickhart DM
    Methods Mol Biol; 2018; 1833():143-153. PubMed ID: 30039370
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
    Soylev A; Le TM; Amini H; Alkan C; Hormozdiari F
    Bioinformatics; 2019 Oct; 35(20):3923-3930. PubMed ID: 30937433
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sensitive and accurate detection of copy number variants using read depth of coverage.
    Yoon S; Xuan Z; Makarov V; Ye K; Sebat J
    Genome Res; 2009 Sep; 19(9):1586-92. PubMed ID: 19657104
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Family-Based Benchmarking of Copy Number Variation Detection Software.
    Nutsua ME; Fischer A; Nebel A; Hofmann S; Schreiber S; Krawczak M; Nothnagel M
    PLoS One; 2015; 10(7):e0133465. PubMed ID: 26197066
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
    Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
    BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing.
    Abyzov A; Urban AE; Snyder M; Gerstein M
    Genome Res; 2011 Jun; 21(6):974-84. PubMed ID: 21324876
    [TBL] [Abstract][Full Text] [Related]  

  • 8. G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.
    Manconi A; Manca E; Moscatelli M; Gnocchi M; Orro A; Armano G; Milanesi L
    Front Bioeng Biotechnol; 2015; 3():28. PubMed ID: 25806367
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Read count approach for DNA copy number variants detection.
    Magi A; Tattini L; Pippucci T; Torricelli F; Benelli M
    Bioinformatics; 2012 Feb; 28(4):470-8. PubMed ID: 22199393
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Read Depth Analysis to Identify CNV in Bacteria Using CNOGpro.
    Brynildsrud O
    Methods Mol Biol; 2018; 1833():73-81. PubMed ID: 30039364
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluation of the performance of copy number variant prediction tools for the detection of deletions from whole genome sequencing data.
    Whitford W; Lehnert K; Snell RG; Jacobsen JC
    J Biomed Inform; 2019 Jun; 94():103174. PubMed ID: 30965134
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of multiple algorithms to reliably detect structural variants in pears.
    Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
    BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Noise cancellation using total variation for copy number variation detection.
    Zare F; Hosny A; Nabavi S
    BMC Bioinformatics; 2018 Oct; 19(Suppl 11):361. PubMed ID: 30343665
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
    Nam JY; Kim NK; Kim SC; Joung JG; Xi R; Lee S; Park PJ; Park WY
    Brief Bioinform; 2016 Mar; 17(2):185-92. PubMed ID: 26210357
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations.
    Wang X; Zheng Z; Cai Y; Chen T; Li C; Fu W; Jiang Y
    Gigascience; 2017 Dec; 6(12):1-12. PubMed ID: 29220491
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Exome sequence read depth methods for identifying copy number changes.
    Kadalayil L; Rafiq S; Rose-Zerilli MJ; Pengelly RJ; Parker H; Oscier D; Strefford JC; Tapper WJ; Gibson J; Ennis S; Collins A
    Brief Bioinform; 2015 May; 16(3):380-92. PubMed ID: 25169955
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Toolkit for automated and rapid discovery of structural variants.
    Soylev A; Kockan C; Hormozdiari F; Alkan C
    Methods; 2017 Oct; 129():3-7. PubMed ID: 28583483
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Copy number variations in the genome of the Qatari population.
    Fakhro KA; Yousri NA; Rodriguez-Flores JL; Robay A; Staudt MR; Agosto-Perez F; Salit J; Malek JA; Suhre K; Jayyousi A; Zirie M; Stadler D; Mezey JG; Crystal RG
    BMC Genomics; 2015 Oct; 16():834. PubMed ID: 26490036
    [TBL] [Abstract][Full Text] [Related]  

  • 19. iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
    Dharanipragada P; Vogeti S; Parekh N
    PLoS One; 2018; 13(4):e0195334. PubMed ID: 29621297
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.
    Xi R; Hadjipanayis AG; Luquette LJ; Kim TM; Lee E; Zhang J; Johnson MD; Muzny DM; Wheeler DA; Gibbs RA; Kucherlapati R; Park PJ
    Proc Natl Acad Sci U S A; 2011 Nov; 108(46):E1128-36. PubMed ID: 22065754
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.