156 related articles for article (PubMed ID: 30039363)
1. Whole-Genome Shotgun Sequence CNV Detection Using Read Depth.
Kahveci F; Alkan C
Methods Mol Biol; 2018; 1833():61-72. PubMed ID: 30039363
[TBL] [Abstract][Full Text] [Related]
2. Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures.
Bickhart DM
Methods Mol Biol; 2018; 1833():143-153. PubMed ID: 30039370
[TBL] [Abstract][Full Text] [Related]
3. Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
Soylev A; Le TM; Amini H; Alkan C; Hormozdiari F
Bioinformatics; 2019 Oct; 35(20):3923-3930. PubMed ID: 30937433
[TBL] [Abstract][Full Text] [Related]
4. Sensitive and accurate detection of copy number variants using read depth of coverage.
Yoon S; Xuan Z; Makarov V; Ye K; Sebat J
Genome Res; 2009 Sep; 19(9):1586-92. PubMed ID: 19657104
[TBL] [Abstract][Full Text] [Related]
5. Family-Based Benchmarking of Copy Number Variation Detection Software.
Nutsua ME; Fischer A; Nebel A; Hofmann S; Schreiber S; Krawczak M; Nothnagel M
PLoS One; 2015; 10(7):e0133465. PubMed ID: 26197066
[TBL] [Abstract][Full Text] [Related]
6. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
[TBL] [Abstract][Full Text] [Related]
7. CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing.
Abyzov A; Urban AE; Snyder M; Gerstein M
Genome Res; 2011 Jun; 21(6):974-84. PubMed ID: 21324876
[TBL] [Abstract][Full Text] [Related]
8. G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.
Manconi A; Manca E; Moscatelli M; Gnocchi M; Orro A; Armano G; Milanesi L
Front Bioeng Biotechnol; 2015; 3():28. PubMed ID: 25806367
[TBL] [Abstract][Full Text] [Related]
9. Read count approach for DNA copy number variants detection.
Magi A; Tattini L; Pippucci T; Torricelli F; Benelli M
Bioinformatics; 2012 Feb; 28(4):470-8. PubMed ID: 22199393
[TBL] [Abstract][Full Text] [Related]
10. Read Depth Analysis to Identify CNV in Bacteria Using CNOGpro.
Brynildsrud O
Methods Mol Biol; 2018; 1833():73-81. PubMed ID: 30039364
[TBL] [Abstract][Full Text] [Related]
11. Evaluation of the performance of copy number variant prediction tools for the detection of deletions from whole genome sequencing data.
Whitford W; Lehnert K; Snell RG; Jacobsen JC
J Biomed Inform; 2019 Jun; 94():103174. PubMed ID: 30965134
[TBL] [Abstract][Full Text] [Related]
12. Comparison of multiple algorithms to reliably detect structural variants in pears.
Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
[TBL] [Abstract][Full Text] [Related]
13. Noise cancellation using total variation for copy number variation detection.
Zare F; Hosny A; Nabavi S
BMC Bioinformatics; 2018 Oct; 19(Suppl 11):361. PubMed ID: 30343665
[TBL] [Abstract][Full Text] [Related]
14. Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
Nam JY; Kim NK; Kim SC; Joung JG; Xi R; Lee S; Park PJ; Park WY
Brief Bioinform; 2016 Mar; 17(2):185-92. PubMed ID: 26210357
[TBL] [Abstract][Full Text] [Related]
15. CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations.
Wang X; Zheng Z; Cai Y; Chen T; Li C; Fu W; Jiang Y
Gigascience; 2017 Dec; 6(12):1-12. PubMed ID: 29220491
[TBL] [Abstract][Full Text] [Related]
16. Exome sequence read depth methods for identifying copy number changes.
Kadalayil L; Rafiq S; Rose-Zerilli MJ; Pengelly RJ; Parker H; Oscier D; Strefford JC; Tapper WJ; Gibson J; Ennis S; Collins A
Brief Bioinform; 2015 May; 16(3):380-92. PubMed ID: 25169955
[TBL] [Abstract][Full Text] [Related]
17. Toolkit for automated and rapid discovery of structural variants.
Soylev A; Kockan C; Hormozdiari F; Alkan C
Methods; 2017 Oct; 129():3-7. PubMed ID: 28583483
[TBL] [Abstract][Full Text] [Related]
18. Copy number variations in the genome of the Qatari population.
Fakhro KA; Yousri NA; Rodriguez-Flores JL; Robay A; Staudt MR; Agosto-Perez F; Salit J; Malek JA; Suhre K; Jayyousi A; Zirie M; Stadler D; Mezey JG; Crystal RG
BMC Genomics; 2015 Oct; 16():834. PubMed ID: 26490036
[TBL] [Abstract][Full Text] [Related]
19. iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
Dharanipragada P; Vogeti S; Parekh N
PLoS One; 2018; 13(4):e0195334. PubMed ID: 29621297
[TBL] [Abstract][Full Text] [Related]
20. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.
Xi R; Hadjipanayis AG; Luquette LJ; Kim TM; Lee E; Zhang J; Johnson MD; Muzny DM; Wheeler DA; Gibbs RA; Kucherlapati R; Park PJ
Proc Natl Acad Sci U S A; 2011 Nov; 108(46):E1128-36. PubMed ID: 22065754
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
