209 related articles for article (PubMed ID: 30055873)
1. PhoPepMass: A database and search tool assisting human phosphorylation peptide identification from mass spectrometry data.
Zhang M; Cui H; Chen L; Yu Y; Glocker MO; Xie L
J Genet Genomics; 2018 Jul; 45(7):381-388. PubMed ID: 30055873
[TBL] [Abstract][Full Text] [Related]
2. Automated phosphopeptide identification using multiple MS/MS fragmentation modes.
Vandenbogaert M; Hourdel V; Jardin-Mathé O; Bigeard J; Bonhomme L; Legros V; Hirt H; Schwikowski B; Pflieger D
J Proteome Res; 2012 Dec; 11(12):5695-703. PubMed ID: 23094866
[TBL] [Abstract][Full Text] [Related]
3. X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification.
Langella O; Valot B; Balliau T; Blein-Nicolas M; Bonhomme L; Zivy M
J Proteome Res; 2017 Feb; 16(2):494-503. PubMed ID: 27990826
[TBL] [Abstract][Full Text] [Related]
4. SimPhospho: a software tool enabling confident phosphosite assignment.
Suni V; Suomi T; Tsubosaka T; Imanishi SY; Elo LL; Corthals GL
Bioinformatics; 2018 Aug; 34(15):2690-2692. PubMed ID: 29596608
[TBL] [Abstract][Full Text] [Related]
5. Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.
Yu LR; Zhu Z; Chan KC; Issaq HJ; Dimitrov DS; Veenstra TD
J Proteome Res; 2007 Nov; 6(11):4150-62. PubMed ID: 17924679
[TBL] [Abstract][Full Text] [Related]
6. High-Throughput Characterization of Histidine Phosphorylation Sites Using UPAX and Tandem Mass Spectrometry.
Hardman G; Eyers CE
Methods Mol Biol; 2020; 2077():225-235. PubMed ID: 31707662
[TBL] [Abstract][Full Text] [Related]
7. Simultaneous quantification of protein phosphorylation sites using liquid chromatography-tandem mass spectrometry-based targeted proteomics: a linear algebra approach for isobaric phosphopeptides.
Xu F; Yang T; Sheng Y; Zhong T; Yang M; Chen Y
J Proteome Res; 2014 Dec; 13(12):5452-60. PubMed ID: 25403019
[TBL] [Abstract][Full Text] [Related]
8. Identification of phosphopeptides with unknown cleavage specificity by a de novo sequencing assisted database search strategy.
Dong M; Ye M; Cheng K; Dong J; Zhu J; Qin H; Bian Y; Zou H
Proteomics; 2014 Nov; 14(21-22):2410-6. PubMed ID: 25137130
[TBL] [Abstract][Full Text] [Related]
9. Effect of high-accuracy precursor masses on phosphopeptide identification from MS3 spectra.
Timm W; Ozlu N; Steen JJ; Steen H
Anal Chem; 2010 May; 82(10):3977-80. PubMed ID: 20426395
[TBL] [Abstract][Full Text] [Related]
10. Mining phosphopeptide signals in liquid chromatography-mass spectrometry data for protein phosphorylation analysis.
Wu HY; Tseng VS; Liao PC
J Proteome Res; 2007 May; 6(5):1812-21. PubMed ID: 17402769
[TBL] [Abstract][Full Text] [Related]
11. Evaluation of Parameters for Confident Phosphorylation Site Localization Using an Orbitrap Fusion Tribrid Mass Spectrometer.
Ferries S; Perkins S; Brownridge PJ; Campbell A; Eyers PA; Jones AR; Eyers CE
J Proteome Res; 2017 Sep; 16(9):3448-3459. PubMed ID: 28741359
[TBL] [Abstract][Full Text] [Related]
12. Selective Enrichment of Cysteine-Containing Phosphopeptides for Subphosphoproteome Analysis.
Dong M; Bian Y; Dong J; Wang K; Liu Z; Qin H; Ye M; Zou H
J Proteome Res; 2015 Dec; 14(12):5341-7. PubMed ID: 26552605
[TBL] [Abstract][Full Text] [Related]
13. Citrate boosts the performance of phosphopeptide analysis by UPLC-ESI-MS/MS.
Winter D; Seidler J; Ziv Y; Shiloh Y; Lehmann WD
J Proteome Res; 2009 Jan; 8(1):418-24. PubMed ID: 19053530
[TBL] [Abstract][Full Text] [Related]
14. Automatic validation of phosphopeptide identifications from tandem mass spectra.
Lu B; Ruse C; Xu T; Park SK; Yates J
Anal Chem; 2007 Feb; 79(4):1301-10. PubMed ID: 17297928
[TBL] [Abstract][Full Text] [Related]
15. Estimating the Efficiency of Phosphopeptide Identification by Tandem Mass Spectrometry.
Hsu CC; Xue L; Arrington JV; Wang P; Paez Paez JS; Zhou Y; Zhu JK; Tao WA
J Am Soc Mass Spectrom; 2017 Jun; 28(6):1127-1135. PubMed ID: 28283928
[TBL] [Abstract][Full Text] [Related]
16. An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.
Bodenmiller B; Mueller LN; Pedrioli PG; Pflieger D; Jünger MA; Eng JK; Aebersold R; Tao WA
Mol Biosyst; 2007 Apr; 3(4):275-86. PubMed ID: 17372656
[TBL] [Abstract][Full Text] [Related]
17. Accurate phosphorylation site localization using phospho-brackets.
Xiao K; Shen Y; Li S; Tian Z
Anal Chim Acta; 2017 Dec; 996():38-47. PubMed ID: 29137706
[TBL] [Abstract][Full Text] [Related]
18. Correction of errors in tandem mass spectrum extraction enhances phosphopeptide identification.
Hao P; Ren Y; Tam JP; Sze SK
J Proteome Res; 2013 Dec; 12(12):5548-57. PubMed ID: 24147958
[TBL] [Abstract][Full Text] [Related]
19. Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation.
Collins MO; Wright JC; Jones M; Rayner JC; Choudhary JS
J Proteomics; 2014 May; 103(100):1-14. PubMed ID: 24657495
[TBL] [Abstract][Full Text] [Related]
20. Phosphopeptide mapping and identification of phosphorylation sites.
Meisenhelder J; Hunter T; van der Geer P
Curr Protoc Mol Biol; 2001 May; Chapter 18():Unit 18.9. PubMed ID: 18265174
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]