136 related articles for article (PubMed ID: 30078993)
1. Insights into conformational changes in AlkD bound to DNA with a yatakemycin adduct from computational simulations.
Silvestrov P; Cisneros GA
Theor Chem Acc; 2018 Jun; 137():. PubMed ID: 30078993
[TBL] [Abstract][Full Text] [Related]
2. The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Mullins EA; Shi R; Parsons ZD; Yuen PK; David SS; Igarashi Y; Eichman BF
Nature; 2015 Nov; 527(7577):254-8. PubMed ID: 26524531
[TBL] [Abstract][Full Text] [Related]
3. Characterization of the Search Complex and Recognition Mechanism of the AlkD-DNA Glycosylase.
Votaw KA; McCullagh M
J Phys Chem B; 2019 Jan; 123(1):95-105. PubMed ID: 30525620
[TBL] [Abstract][Full Text] [Related]
4. A Catalytic Role for C-H/π Interactions in Base Excision Repair by Bacillus cereus DNA Glycosylase AlkD.
Parsons ZD; Bland JM; Mullins EA; Eichman BF
J Am Chem Soc; 2016 Sep; 138(36):11485-8. PubMed ID: 27571247
[TBL] [Abstract][Full Text] [Related]
5. Effect of Watson-Crick and Hoogsteen base pairing on the conformational stability of C8-phenoxyl-2'-deoxyguanosine adducts.
Millen AL; Churchill CD; Manderville RA; Wetmore SD
J Phys Chem B; 2010 Oct; 114(40):12995-3004. PubMed ID: 20853889
[TBL] [Abstract][Full Text] [Related]
6. DNA alkylation lesions and their repair in human cells: modification of the comet assay with 3-methyladenine DNA glycosylase (AlkD).
Hašplová K; Hudecová A; Magdolénová Z; Bjøras M; Gálová E; Miadoková E; Dušinská M
Toxicol Lett; 2012 Jan; 208(1):76-81. PubMed ID: 22019460
[TBL] [Abstract][Full Text] [Related]
7. A new protein architecture for processing alkylation damaged DNA: the crystal structure of DNA glycosylase AlkD.
Rubinson EH; Metz AH; O'Quin J; Eichman BF
J Mol Biol; 2008 Aug; 381(1):13-23. PubMed ID: 18585735
[TBL] [Abstract][Full Text] [Related]
8. Structural Biology of the HEAT-Like Repeat Family of DNA Glycosylases.
Shi R; Shen XX; Rokas A; Eichman BF
Bioessays; 2018 Nov; 40(11):e1800133. PubMed ID: 30264543
[TBL] [Abstract][Full Text] [Related]
9. Toxicity and repair of DNA adducts produced by the natural product yatakemycin.
Mullins EA; Shi R; Eichman BF
Nat Chem Biol; 2017 Sep; 13(9):1002-1008. PubMed ID: 28759018
[TBL] [Abstract][Full Text] [Related]
10. Non-flipping DNA glycosylase AlkD scans DNA without formation of a stable interrogation complex.
Ahmadi A; Till K; Backe PH; Blicher P; Diekmann R; Schüttpelz M; Glette K; Tørresen J; Bjørås M; Rowe AD; Dalhus B
Commun Biol; 2021 Jul; 4(1):876. PubMed ID: 34267321
[TBL] [Abstract][Full Text] [Related]
11. Target search and recognition mechanisms of glycosylase AlkD revealed by scanning FRET-FCS and Markov state models.
Peng S; Wang X; Zhang L; He S; Zhao XS; Huang X; Chen C
Proc Natl Acad Sci U S A; 2020 Sep; 117(36):21889-21895. PubMed ID: 32820079
[TBL] [Abstract][Full Text] [Related]
12. Evaluating the Substrate Selectivity of Alkyladenine DNA Glycosylase: The Synergistic Interplay of Active Site Flexibility and Water Reorganization.
Lenz SA; Wetmore SD
Biochemistry; 2016 Feb; 55(5):798-808. PubMed ID: 26765542
[TBL] [Abstract][Full Text] [Related]
13. A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases.
Mullins EA; Shi R; Kotsch LA; Eichman BF
PLoS One; 2015; 10(5):e0127733. PubMed ID: 25978435
[TBL] [Abstract][Full Text] [Related]
14. Glycosidic Bond Cleavage in DNA Nucleosides: Effect of Nucleobase Damage and Activation on the Mechanism and Barrier.
Lenz SA; Kellie JL; Wetmore SD
J Phys Chem B; 2015 Dec; 119(51):15601-12. PubMed ID: 26618397
[TBL] [Abstract][Full Text] [Related]
15. A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD.
Alseth I; Rognes T; Lindbäck T; Solberg I; Robertsen K; Kristiansen KI; Mainieri D; Lillehagen L; Kolstø AB; Bjørås M
Mol Microbiol; 2006 Mar; 59(5):1602-9. PubMed ID: 16468998
[TBL] [Abstract][Full Text] [Related]
16. Structural evolution of a DNA repair self-resistance mechanism targeting genotoxic secondary metabolites.
Mullins EA; Dorival J; Tang GL; Boger DL; Eichman BF
Nat Commun; 2021 Nov; 12(1):6942. PubMed ID: 34836957
[TBL] [Abstract][Full Text] [Related]
17. Human alkyladenine DNA glycosylase uses acid-base catalysis for selective excision of damaged purines.
O'Brien PJ; Ellenberger T
Biochemistry; 2003 Oct; 42(42):12418-29. PubMed ID: 14567703
[TBL] [Abstract][Full Text] [Related]
18. Conformational preferences of DNA following damage by aristolochic acids: Structural and energetic insights into the different mutagenic potential of the ALI and ALII-N(6)-dA adducts.
Kathuria P; Sharma P; Abendong MN; Wetmore SD
Biochemistry; 2015 Apr; 54(15):2414-28. PubMed ID: 25761009
[TBL] [Abstract][Full Text] [Related]
19. Three-dimensional structural views of damaged-DNA recognition: T4 endonuclease V, E. coli Vsr protein, and human nucleotide excision repair factor XPA.
Morikawa K; Shirakawa M
Mutat Res; 2000 Aug; 460(3-4):257-75. PubMed ID: 10946233
[TBL] [Abstract][Full Text] [Related]
20. Effect O6-guanine alkylation on DNA flexibility studied by comparative molecular dynamics simulations.
Kara M; Drsata T; Lankas F; Zacharias M
Biopolymers; 2015 Jan; 103(1):23-32. PubMed ID: 25130987
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]