BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

102 related articles for article (PubMed ID: 30079244)

  • 21. Displaying chemical information on a biological network using Cytoscape.
    Wallace IM; Bader GD; Giaever G; Nislow C
    Methods Mol Biol; 2011; 781():363-76. PubMed ID: 21877291
    [TBL] [Abstract][Full Text] [Related]  

  • 22. aMatReader: Importing adjacency matrices via Cytoscape Automation.
    Settle B; Otasek D; Morris JH; Demchak B
    F1000Res; 2018; 7():. PubMed ID: 30026937
    [TBL] [Abstract][Full Text] [Related]  

  • 23. DyNet: visualization and analysis of dynamic molecular interaction networks.
    Goenawan IH; Bryan K; Lynn DJ
    Bioinformatics; 2016 Sep; 32(17):2713-5. PubMed ID: 27153624
    [TBL] [Abstract][Full Text] [Related]  

  • 24. The Cytoscape Automation app article collection.
    Demchak B; Otasek D; Pico AR; Bader GD; Ono K; Settle B; Sage E; Morris JH; Longabaugh W; Lopes C; Kucera M; Treister A; Schwikowski B; Molenaar P; Ideker T
    F1000Res; 2018; 7():800. PubMed ID: 29983926
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Cytoscape app store.
    Lotia S; Montojo J; Dong Y; Bader GD; Pico AR
    Bioinformatics; 2013 May; 29(10):1350-1. PubMed ID: 23595664
    [TBL] [Abstract][Full Text] [Related]  

  • 26. OmicsViz: Cytoscape plug-in for visualizing omics data across species.
    Xia T; Dickerson JA
    Bioinformatics; 2008 Nov; 24(21):2557-8. PubMed ID: 18779234
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Integration of genomic information with biological networks using Cytoscape.
    Bauer-Mehren A
    Methods Mol Biol; 2013; 1021():37-61. PubMed ID: 23715979
    [TBL] [Abstract][Full Text] [Related]  

  • 28. CyTargetLinker app update: A flexible solution for network extension in Cytoscape.
    Kutmon M; Ehrhart F; Willighagen EL; Evelo CT; Coort SL
    F1000Res; 2018; 7():. PubMed ID: 31489175
    [TBL] [Abstract][Full Text] [Related]  

  • 29. DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks.
    Bauer-Mehren A; Rautschka M; Sanz F; Furlong LI
    Bioinformatics; 2010 Nov; 26(22):2924-6. PubMed ID: 20861032
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Bringing data from curated pathway resources to Cytoscape with OmniPath.
    Ceccarelli F; Turei D; Gabor A; Saez-Rodriguez J
    Bioinformatics; 2020 Apr; 36(8):2632-2633. PubMed ID: 31886476
    [TBL] [Abstract][Full Text] [Related]  

  • 31. SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.
    Westenberg MA; Roerdink JB; Kuipers OP; van Hijum SA
    Bioinformatics; 2010 Nov; 26(22):2922-3. PubMed ID: 20861033
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Using the Contextual Hub Analysis Tool (CHAT) in Cytoscape to Identify Contextually Relevant Network Hubs.
    Muetze T; Lynn DJ
    Curr Protoc Bioinformatics; 2017 Sep; 59():8.24.1-8.24.13. PubMed ID: 28902399
    [TBL] [Abstract][Full Text] [Related]  

  • 33. GPEC: a Cytoscape plug-in for random walk-based gene prioritization and biomedical evidence collection.
    Le DH; Kwon YK
    Comput Biol Chem; 2012 Apr; 37():17-23. PubMed ID: 22430954
    [TBL] [Abstract][Full Text] [Related]  

  • 34. CyNetworkBMA: a Cytoscape app for inferring gene regulatory networks.
    Fronczuk M; Raftery AE; Yeung KY
    Source Code Biol Med; 2015; 10():11. PubMed ID: 26566394
    [TBL] [Abstract][Full Text] [Related]  

  • 35. RCy3: Network biology using Cytoscape from within R.
    Gustavsen JA; Pai S; Isserlin R; Demchak B; Pico AR
    F1000Res; 2019; 8():1774. PubMed ID: 31819800
    [TBL] [Abstract][Full Text] [Related]  

  • 36. cPath: open source software for collecting, storing, and querying biological pathways.
    Cerami EG; Bader GD; Gross BE; Sander C
    BMC Bioinformatics; 2006 Nov; 7():497. PubMed ID: 17101041
    [TBL] [Abstract][Full Text] [Related]  

  • 37. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.
    Li M; Yang J; Wu FX; Pan Y; Wang J
    Bioinformatics; 2018 May; 34(9):1597-1599. PubMed ID: 29293938
    [TBL] [Abstract][Full Text] [Related]  

  • 38. CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis.
    Wu L; Li M; Wang J; Wu FX
    Bioinformatics; 2018 Apr; 34(8):1428-1430. PubMed ID: 29186337
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Analysis and Visualization of Dynamic Networks Using the DyNet App for Cytoscape.
    Salamon J; Goenawan IH; Lynn DJ
    Curr Protoc Bioinformatics; 2018 Sep; 63(1):e55. PubMed ID: 30168906
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Exploring biological networks with Cytoscape software.
    Yeung N; Cline MS; Kuchinsky A; Smoot ME; Bader GD
    Curr Protoc Bioinformatics; 2008 Sep; Chapter 8():8.13.1-8.13.20. PubMed ID: 18819078
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.