These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

114 related articles for article (PubMed ID: 30091475)

  • 1. Metagenome complexity and template length are the main causes of bias in PCR-based bacteria community analysis.
    Peng W; Li X; Wang C; Cao H; Cui Z
    J Basic Microbiol; 2018 Nov; 58(11):987-997. PubMed ID: 30091475
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis.
    Sipos R; Székely AJ; Palatinszky M; Révész S; Márialigeti K; Nikolausz M
    FEMS Microbiol Ecol; 2007 May; 60(2):341-50. PubMed ID: 17343679
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.
    Brooks JP; Edwards DJ; Harwich MD; Rivera MC; Fettweis JM; Serrano MG; Reris RA; Sheth NU; Huang B; Girerd P; ; Strauss JF; Jefferson KK; Buck GA
    BMC Microbiol; 2015 Mar; 15():66. PubMed ID: 25880246
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarrays.
    Paliy O; Foy BD
    Bioinformatics; 2011 Aug; 27(15):2134-40. PubMed ID: 21653518
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR.
    Suzuki MT; Giovannoni SJ
    Appl Environ Microbiol; 1996 Feb; 62(2):625-30. PubMed ID: 8593063
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Bias in template-to-product ratios in multitemplate PCR.
    Polz MF; Cavanaugh CM
    Appl Environ Microbiol; 1998 Oct; 64(10):3724-30. PubMed ID: 9758791
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method.
    Wu JY; Jiang XT; Jiang YX; Lu SY; Zou F; Zhou HW
    BMC Microbiol; 2010 Oct; 10():255. PubMed ID: 20937143
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR.
    Ishii K; Fukui M
    Appl Environ Microbiol; 2001 Aug; 67(8):3753-5. PubMed ID: 11472961
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts.
    Lueders T; Friedrich MW
    Appl Environ Microbiol; 2003 Jan; 69(1):320-6. PubMed ID: 12514011
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantitative improvement of 16S rDNA DGGE analysis for soil bacterial community using real-time PCR.
    Ahn JH; Kim YJ; Kim T; Song HG; Kang C; Ka JO
    J Microbiol Methods; 2009 Aug; 78(2):216-22. PubMed ID: 19523498
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Amplification by PCR artificially reduces the proportion of the rare biosphere in microbial communities.
    Gonzalez JM; Portillo MC; Belda-Ferre P; Mira A
    PLoS One; 2012; 7(1):e29973. PubMed ID: 22253843
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PCR-based community structure studies of bacteria associated with eukaryotic organisms: a simple PCR strategy to avoid co-amplification of eukaryotic DNA.
    Bakke I; De Schryver P; Boon N; Vadstein O
    J Microbiol Methods; 2011 Feb; 84(2):349-51. PubMed ID: 21182876
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses.
    Parras-Moltó M; Rodríguez-Galet A; Suárez-Rodríguez P; López-Bueno A
    Microbiome; 2018 Jun; 6(1):119. PubMed ID: 29954453
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data.
    Sze MA; Schloss PD
    mSphere; 2019 May; 4(3):. PubMed ID: 31118299
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Cultivation Versus Molecular Analysis of Banana (Musa sp.) Shoot-Tip Tissue Reveals Enormous Diversity of Normally Uncultivable Endophytic Bacteria.
    Thomas P; Sekhar AC
    Microb Ecol; 2017 May; 73(4):885-899. PubMed ID: 27833995
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Micelle PCR reduces chimera formation in 16S rRNA profiling of complex microbial DNA mixtures.
    Boers SA; Hays JP; Jansen R
    Sci Rep; 2015 Sep; 5():14181. PubMed ID: 26373611
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    Zou B; Li J; Zhou Q; Quan ZX
    PLoS One; 2017; 12(3):e0174609. PubMed ID: 28350876
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes.
    Guo J; Cole JR; Zhang Q; Brown CT; Tiedje JM
    Appl Environ Microbiol; 2016 Jan; 82(1):157-66. PubMed ID: 26475107
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.
    Logares R; Sunagawa S; Salazar G; Cornejo-Castillo FM; Ferrera I; Sarmento H; Hingamp P; Ogata H; de Vargas C; Lima-Mendez G; Raes J; Poulain J; Jaillon O; Wincker P; Kandels-Lewis S; Karsenti E; Bork P; Acinas SG
    Environ Microbiol; 2014 Sep; 16(9):2659-71. PubMed ID: 24102695
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Analysis of bacterial xylose isomerase gene diversity using gene-targeted metagenomics.
    Nurdiani D; Ito M; Maruyama T; Terahara T; Mori T; Ugawa S; Takeyama H
    J Biosci Bioeng; 2015 Aug; 120(2):174-80. PubMed ID: 25656071
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.