132 related articles for article (PubMed ID: 30092596)
1. Large-Scale in Vitro Transcription, RNA Purification and Chemical Probing Analysis.
Kanwal F; Chen T; Zhang Y; Zhang Y; Simair A; Rujie C; Sadaf Zaidi NUS; Guo X; Wei X; Siegel G; Lu C
Cell Physiol Biochem; 2018; 48(5):1915-1927. PubMed ID: 30092596
[TBL] [Abstract][Full Text] [Related]
2. A Modified In Vitro Transcription Approach to Improve RNA Synthesis and Ribozyme Cleavage Efficiency.
Kanwal F; Chen T; Zhang Y; Simair A; Lu C
Mol Biotechnol; 2019 Jul; 61(7):469-476. PubMed ID: 30868354
[TBL] [Abstract][Full Text] [Related]
3. Native Purification and Analysis of Long RNAs.
Chillón I; Marcia M; Legiewicz M; Liu F; Somarowthu S; Pyle AM
Methods Enzymol; 2015; 558():3-37. PubMed ID: 26068736
[TBL] [Abstract][Full Text] [Related]
4. Analysis of the RNA backbone: structural analysis of riboswitches by in-line probing and selective 2'-hydroxyl acylation and primer extension.
Wakeman CA; Winkler WC
Methods Mol Biol; 2009; 540():173-91. PubMed ID: 19381560
[TBL] [Abstract][Full Text] [Related]
5. Use of SHAPE to select 2AP substitution sites for RNA-ligand interactions and dynamics studies.
Soulière MF; Micura R
Methods Mol Biol; 2014; 1103():227-39. PubMed ID: 24318898
[TBL] [Abstract][Full Text] [Related]
6. Rapid NMR screening of RNA secondary structure and binding.
Helmling C; Keyhani S; Sochor F; Fürtig B; Hengesbach M; Schwalbe H
J Biomol NMR; 2015 Sep; 63(1):67-76. PubMed ID: 26188386
[TBL] [Abstract][Full Text] [Related]
7. Determination of RNA Structure with In Vitro SHAPE Experiments.
Baes R; Charlier D; Peeters E
Methods Mol Biol; 2022; 2516():259-290. PubMed ID: 35922631
[TBL] [Abstract][Full Text] [Related]
8. Purification and Structural Characterization of the Long Noncoding RNAs.
Yankey A; Clark SC; Owens MC; Somarowthu S
Methods Mol Biol; 2021; 2372():93-110. PubMed ID: 34417746
[TBL] [Abstract][Full Text] [Related]
9. Integrating molecular dynamics simulations with chemical probing experiments using SHAPE-FIT.
Kirmizialtin S; Hennelly SP; Schug A; Onuchic JN; Sanbonmatsu KY
Methods Enzymol; 2015; 553():215-34. PubMed ID: 25726467
[TBL] [Abstract][Full Text] [Related]
10. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.
Wilkinson KA; Merino EJ; Weeks KM
Nat Protoc; 2006; 1(3):1610-6. PubMed ID: 17406453
[TBL] [Abstract][Full Text] [Related]
11. Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Watters KE; Yu AM; Strobel EJ; Settle AH; Lucks JB
Methods; 2016 Jul; 103():34-48. PubMed ID: 27064082
[TBL] [Abstract][Full Text] [Related]
12. Dissecting the secondary structure of the circular RNA of a nuclear viroid in vivo: A "naked" rod-like conformation similar but not identical to that observed in vitro.
López-Carrasco A; Flores R
RNA Biol; 2017 Aug; 14(8):1046-1054. PubMed ID: 27574720
[TBL] [Abstract][Full Text] [Related]
13. SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data.
Poulsen LD; Kielpinski LJ; Salama SR; Krogh A; Vinther J
RNA; 2015 May; 21(5):1042-52. PubMed ID: 25805860
[TBL] [Abstract][Full Text] [Related]
14. In-cell RNA structure probing with SHAPE-MaP.
Smola MJ; Weeks KM
Nat Protoc; 2018 Jun; 13(6):1181-1195. PubMed ID: 29725122
[TBL] [Abstract][Full Text] [Related]
15. The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn
Grzywacz K; Chełkowska-Pauszek A; Plucinska-Jankowska M; Żywicki M
Int J Mol Sci; 2023 Apr; 24(9):. PubMed ID: 37175596
[TBL] [Abstract][Full Text] [Related]
16. Plasmid template design and in vitro transcription of short RNAs within a "structure cassette" for structure probing experiments.
Vachon VK; Conn GL
Methods Mol Biol; 2012; 941():157-69. PubMed ID: 23065560
[TBL] [Abstract][Full Text] [Related]
17. SHAPE Directed Discovery of New Functions in Large RNAs.
Weeks KM
Acc Chem Res; 2021 May; 54(10):2502-2517. PubMed ID: 33960770
[TBL] [Abstract][Full Text] [Related]
18. Rapid purification of RNAs using fast performance liquid chromatography (FPLC).
Kim I; McKenna SA; Viani Puglisi E; Puglisi JD
RNA; 2007 Feb; 13(2):289-94. PubMed ID: 17179067
[TBL] [Abstract][Full Text] [Related]
19. Comparative Analysis Reveals Furoyl in Vivo Selective Hydroxyl Acylation Analyzed by Primer Extension Reagents Form Stable Ribosyl Ester Adducts.
Chan D; Feng C; Zhen Y; Flynn RA; Spitale RC
Biochemistry; 2017 Apr; 56(13):1811-1814. PubMed ID: 28319368
[TBL] [Abstract][Full Text] [Related]
20. Assaying RNA Structure Inside Living Cells with SHAPE.
Feng C; Chan D; Spitale RC
Methods Mol Biol; 2017; 1648():247-256. PubMed ID: 28766302
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
