216 related articles for article (PubMed ID: 30097542)
1. Accelerated RNA secondary structure design using preselected sequences for helices and loops.
Bellaousov S; Kayedkhordeh M; Peterson RJ; Mathews DH
RNA; 2018 Nov; 24(11):1555-1567. PubMed ID: 30097542
[TBL] [Abstract][Full Text] [Related]
2. Predicting RNA-RNA Interactions Using RNAstructure.
DiChiacchio L; Mathews DH
Methods Mol Biol; 2016; 1490():51-62. PubMed ID: 27665592
[TBL] [Abstract][Full Text] [Related]
3. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
Harmanci AO; Sharma G; Mathews DH
BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
[TBL] [Abstract][Full Text] [Related]
4. NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.
Turner DH; Mathews DH
Nucleic Acids Res; 2010 Jan; 38(Database issue):D280-2. PubMed ID: 19880381
[TBL] [Abstract][Full Text] [Related]
5. RNAstructure: software for RNA secondary structure prediction and analysis.
Reuter JS; Mathews DH
BMC Bioinformatics; 2010 Mar; 11():129. PubMed ID: 20230624
[TBL] [Abstract][Full Text] [Related]
6. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
Garcia-Martin JA; Bayegan AH; Dotu I; Clote P
BMC Bioinformatics; 2016 Oct; 17(1):424. PubMed ID: 27756204
[TBL] [Abstract][Full Text] [Related]
7. Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.
Xu Z; Mathews DH
Bioinformatics; 2011 Mar; 27(5):626-32. PubMed ID: 21193521
[TBL] [Abstract][Full Text] [Related]
8. Exact calculation of loop formation probability identifies folding motifs in RNA secondary structures.
Sloma MF; Mathews DH
RNA; 2016 Dec; 22(12):1808-1818. PubMed ID: 27852924
[TBL] [Abstract][Full Text] [Related]
9. Network Properties of the Ensemble of RNA Structures.
Clote P; Bayegan A
PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
[TBL] [Abstract][Full Text] [Related]
10. Swellix: a computational tool to explore RNA conformational space.
Sloat N; Liu JW; Schroeder SJ
BMC Bioinformatics; 2017 Nov; 18(1):504. PubMed ID: 29157200
[TBL] [Abstract][Full Text] [Related]
11. Efficient algorithms for probing the RNA mutation landscape.
Waldispühl J; Devadas S; Berger B; Clote P
PLoS Comput Biol; 2008 Aug; 4(8):e1000124. PubMed ID: 18688270
[TBL] [Abstract][Full Text] [Related]
12. ProbKnot: fast prediction of RNA secondary structure including pseudoknots.
Bellaousov S; Mathews DH
RNA; 2010 Oct; 16(10):1870-80. PubMed ID: 20699301
[TBL] [Abstract][Full Text] [Related]
13. AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure.
DiChiacchio L; Sloma MF; Mathews DH
Bioinformatics; 2016 Apr; 32(7):1033-9. PubMed ID: 26589271
[TBL] [Abstract][Full Text] [Related]
14. Secondary Structure Prediction of Single Sequences Using RNAstructure.
Xu ZZ; Mathews DH
Methods Mol Biol; 2016; 1490():15-34. PubMed ID: 27665590
[TBL] [Abstract][Full Text] [Related]
15. A method for aligning RNA secondary structures and its application to RNA motif detection.
Liu J; Wang JT; Hu J; Tian B
BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
[TBL] [Abstract][Full Text] [Related]
16. Natural selection and algorithmic design of mRNA.
Cohen B; Skiena S
J Comput Biol; 2003; 10(3-4):419-32. PubMed ID: 12935336
[TBL] [Abstract][Full Text] [Related]
17. BayesFold: rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences.
Knight R; Birmingham A; Yarus M
RNA; 2004 Sep; 10(9):1323-36. PubMed ID: 15317972
[TBL] [Abstract][Full Text] [Related]
18. RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences.
Avihoo A; Churkin A; Barash D
BMC Bioinformatics; 2011 Aug; 12():319. PubMed ID: 21813013
[TBL] [Abstract][Full Text] [Related]
19. TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs.
Tan Z; Fu Y; Sharma G; Mathews DH
Nucleic Acids Res; 2017 Nov; 45(20):11570-11581. PubMed ID: 29036420
[TBL] [Abstract][Full Text] [Related]
20. Modeling RNA secondary structure folding ensembles using SHAPE mapping data.
Spasic A; Assmann SM; Bevilacqua PC; Mathews DH
Nucleic Acids Res; 2018 Jan; 46(1):314-323. PubMed ID: 29177466
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
