176 related articles for article (PubMed ID: 30101282)
1. CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.
Kurcinski M; Oleniecki T; Ciemny MP; Kuriata A; Kolinski A; Kmiecik S
Bioinformatics; 2019 Feb; 35(4):694-695. PubMed ID: 30101282
[TBL] [Abstract][Full Text] [Related]
2. CABS-dock standalone: a toolbox for flexible protein-peptide docking.
Kurcinski M; Pawel Ciemny M; Oleniecki T; Kuriata A; Badaczewska-Dawid AE; Kolinski A; Kmiecik S
Bioinformatics; 2019 Oct; 35(20):4170-4172. PubMed ID: 30865258
[TBL] [Abstract][Full Text] [Related]
3. Aggrescan3D standalone package for structure-based prediction of protein aggregation properties.
Kuriata A; Iglesias V; Kurcinski M; Ventura S; Kmiecik S
Bioinformatics; 2019 Oct; 35(19):3834-3835. PubMed ID: 30825368
[TBL] [Abstract][Full Text] [Related]
4. Structure prediction of linear and cyclic peptides using CABS-flex.
Badaczewska-Dawid A; Wróblewski K; Kurcinski M; Kmiecik S
Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38305457
[TBL] [Abstract][Full Text] [Related]
5. CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.
Kuriata A; Gierut AM; Oleniecki T; Ciemny MP; Kolinski A; Kurcinski M; Kmiecik S
Nucleic Acids Res; 2018 Jul; 46(W1):W338-W343. PubMed ID: 29762700
[TBL] [Abstract][Full Text] [Related]
6. Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.
Kleffner R; Flatten J; Leaver-Fay A; Baker D; Siegel JB; Khatib F; Cooper S
Bioinformatics; 2017 Sep; 33(17):2765-2767. PubMed ID: 28481970
[TBL] [Abstract][Full Text] [Related]
7. CABS-flex predictions of protein flexibility compared with NMR ensembles.
Jamroz M; Kolinski A; Kmiecik S
Bioinformatics; 2014 Aug; 30(15):2150-4. PubMed ID: 24735558
[TBL] [Abstract][Full Text] [Related]
8. CABS-flex: Server for fast simulation of protein structure fluctuations.
Jamroz M; Kolinski A; Kmiecik S
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W427-31. PubMed ID: 23658222
[TBL] [Abstract][Full Text] [Related]
9. Protocols for Fast Simulations of Protein Structure Flexibility Using CABS-Flex and SURPASS.
Badaczewska-Dawid AE; Kolinski A; Kmiecik S
Methods Mol Biol; 2020; 2165():337-353. PubMed ID: 32621235
[TBL] [Abstract][Full Text] [Related]
10. Flexible docking of peptides to proteins using CABS-dock.
Kurcinski M; Badaczewska-Dawid A; Kolinski M; Kolinski A; Kmiecik S
Protein Sci; 2020 Jan; 29(1):211-222. PubMed ID: 31682301
[TBL] [Abstract][Full Text] [Related]
11. Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS Model.
Pulawski W; Jamroz M; Kolinski M; Kolinski A; Kmiecik S
J Chem Inf Model; 2016 Nov; 56(11):2207-2215. PubMed ID: 27775349
[TBL] [Abstract][Full Text] [Related]
12. Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields.
Ciemny MP; Badaczewska-Dawid AE; Pikuzinska M; Kolinski A; Kmiecik S
Int J Mol Sci; 2019 Jan; 20(3):. PubMed ID: 30708941
[TBL] [Abstract][Full Text] [Related]
13. One-Dimensional Structural Properties of Proteins in the Coarse-Grained CABS Model.
Kmiecik S; Kolinski A
Methods Mol Biol; 2017; 1484():83-113. PubMed ID: 27787822
[TBL] [Abstract][Full Text] [Related]
14. Highly Flexible Protein-Peptide Docking Using CABS-Dock.
Ciemny MP; Kurcinski M; Kozak KJ; Kolinski A; Kmiecik S
Methods Mol Biol; 2017; 1561():69-94. PubMed ID: 28236234
[TBL] [Abstract][Full Text] [Related]
15. CABS-fold: Server for the de novo and consensus-based prediction of protein structure.
Blaszczyk M; Jamroz M; Kmiecik S; Kolinski A
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W406-11. PubMed ID: 23748950
[TBL] [Abstract][Full Text] [Related]
16. Protocols for efficient simulations of long-time protein dynamics using coarse-grained CABS model.
Jamroz M; Kolinski A; Kmiecik S
Methods Mol Biol; 2014; 1137():235-50. PubMed ID: 24573485
[TBL] [Abstract][Full Text] [Related]
17. CABS-NMR--De novo tool for rapid global fold determination from chemical shifts, residual dipolar couplings and sparse methyl-methyl NOEs.
Latek D; Kolinski A
J Comput Chem; 2011 Feb; 32(3):536-44. PubMed ID: 20806263
[TBL] [Abstract][Full Text] [Related]
18. ALMOST: an all atom molecular simulation toolkit for protein structure determination.
Fu B; Sahakyan AB; Camilloni C; Tartaglia GG; Paci E; Caflisch A; Vendruscolo M; Cavalli A
J Comput Chem; 2014 May; 35(14):1101-5. PubMed ID: 24676684
[TBL] [Abstract][Full Text] [Related]
19. CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site.
Kurcinski M; Jamroz M; Blaszczyk M; Kolinski A; Kmiecik S
Nucleic Acids Res; 2015 Jul; 43(W1):W419-24. PubMed ID: 25943545
[TBL] [Abstract][Full Text] [Related]
20. PyIOmica: longitudinal omics analysis and trend identification.
Domanskyi S; Piermarocchi C; Mias GI
Bioinformatics; 2020 Apr; 36(7):2306-2307. PubMed ID: 31778155
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
