290 related articles for article (PubMed ID: 30118475)
1. ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization.
Garrido-Martín D; Palumbo E; Guigó R; Breschi A
PLoS Comput Biol; 2018 Aug; 14(8):e1006360. PubMed ID: 30118475
[TBL] [Abstract][Full Text] [Related]
2. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
3. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
[TBL] [Abstract][Full Text] [Related]
4. Jutils: a visualization toolkit for differential alternative splicing events.
Yang G; Cope L; He Z; Florea L
Bioinformatics; 2021 Nov; 37(22):4272-4274. PubMed ID: 34021745
[TBL] [Abstract][Full Text] [Related]
5. Manananggal - a novel viewer for alternative splicing events.
Barann M; Zimmer R; Birzele F
BMC Bioinformatics; 2017 Feb; 18(1):120. PubMed ID: 28222683
[TBL] [Abstract][Full Text] [Related]
6. Quantitative visualization of alternative exon expression from RNA-seq data.
Katz Y; Wang ET; Silterra J; Schwartz S; Wong B; Thorvaldsdóttir H; Robinson JT; Mesirov JP; Airoldi EM; Burge CB
Bioinformatics; 2015 Jul; 31(14):2400-2. PubMed ID: 25617416
[TBL] [Abstract][Full Text] [Related]
7. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
[TBL] [Abstract][Full Text] [Related]
8. VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution.
Wen WX; Mead AJ; Thongjuea S
PLoS Comput Biol; 2020 Sep; 16(9):e1008195. PubMed ID: 32898151
[TBL] [Abstract][Full Text] [Related]
9. SCANVIS: a tool for SCoring, ANnotating and VISualizing splice junctions.
Agius P; Geiger H; Robine N
Bioinformatics; 2019 Nov; 35(22):4843-4845. PubMed ID: 31197308
[TBL] [Abstract][Full Text] [Related]
10. svist4get: a simple visualization tool for genomic tracks from sequencing experiments.
Egorov AA; Sakharova EA; Anisimova AS; Dmitriev SE; Gladyshev VN; Kulakovskiy IV
BMC Bioinformatics; 2019 Mar; 20(1):113. PubMed ID: 30841857
[TBL] [Abstract][Full Text] [Related]
11. SpliceWiz: interactive analysis and visualization of alternative splicing in R.
Wong ACH; Wong JJ; Rasko JEJ; Schmitz U
Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38152981
[TBL] [Abstract][Full Text] [Related]
12. Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer.
Liu Q; Chen C; Shen E; Zhao F; Sun Z; Wu J
Genomics; 2012 Mar; 99(3):178-82. PubMed ID: 22226708
[TBL] [Abstract][Full Text] [Related]
13. SplicePlot: a utility for visualizing splicing quantitative trait loci.
Wu E; Nance T; Montgomery SB
Bioinformatics; 2014 Apr; 30(7):1025-6. PubMed ID: 24363378
[TBL] [Abstract][Full Text] [Related]
14. An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.
Sullivan A; Purohit PK; Freese NH; Pasha A; Esteban E; Waese J; Wu A; Chen M; Chin CY; Song R; Watharkar SR; Chan AP; Krishnakumar V; Vaughn MW; Town C; Loraine AE; Provart NJ
Plant J; 2019 Nov; 100(3):641-654. PubMed ID: 31350781
[TBL] [Abstract][Full Text] [Related]
15. rbamtools: an R interface to samtools enabling fast accumulative tabulation of splicing events over multiple RNA-seq samples.
Kaisers W; Schaal H; Schwender H
Bioinformatics; 2015 May; 31(10):1663-4. PubMed ID: 25563331
[TBL] [Abstract][Full Text] [Related]
16. SL-quant: a fast and flexible pipeline to quantify spliced leader trans-splicing events from RNA-seq data.
Yague-Sanz C; Hermand D
Gigascience; 2018 Jul; 7(7):. PubMed ID: 30010768
[TBL] [Abstract][Full Text] [Related]
17. Trackplot: A flexible toolkit for combinatorial analysis of genomic data.
Zhang Y; Zhou R; Liu L; Chen L; Wang Y
PLoS Comput Biol; 2023 Sep; 19(9):e1011477. PubMed ID: 37669275
[TBL] [Abstract][Full Text] [Related]
18. Clinker: visualizing fusion genes detected in RNA-seq data.
Schmidt BM; Davidson NM; Hawkins ADK; Bartolo R; Majewski IJ; Ekert PG; Oshlack A
Gigascience; 2018 Jul; 7(7):. PubMed ID: 29982439
[TBL] [Abstract][Full Text] [Related]
19. Leveraging transcript quantification for fast computation of alternative splicing profiles.
Alamancos GP; Pagès A; Trincado JL; Bellora N; Eyras E
RNA; 2015 Sep; 21(9):1521-31. PubMed ID: 26179515
[TBL] [Abstract][Full Text] [Related]
20. TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data.
Su W; Sun J; Shimizu K; Kadota K
BMC Res Notes; 2019 Mar; 12(1):133. PubMed ID: 30867032
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
