These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 30129000)

  • 41. VirGen: a comprehensive viral genome resource.
    Kulkarni-Kale U; Bhosle S; Manjari GS; Kolaskar AS
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D289-92. PubMed ID: 14681415
    [TBL] [Abstract][Full Text] [Related]  

  • 42. ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples.
    Tampuu A; Bzhalava Z; Dillner J; Vicente R
    PLoS One; 2019; 14(9):e0222271. PubMed ID: 31509583
    [TBL] [Abstract][Full Text] [Related]  

  • 43. New bioinformatics tools for viral genome analyses at Viral Bioinformatics--Canada.
    Esteban DJ; Da Silva M; Upton C
    Pharmacogenomics; 2005 Apr; 6(3):271-80. PubMed ID: 16013958
    [TBL] [Abstract][Full Text] [Related]  

  • 44. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
    Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
    BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Mash: fast genome and metagenome distance estimation using MinHash.
    Ondov BD; Treangen TJ; Melsted P; Mallonee AB; Bergman NH; Koren S; Phillippy AM
    Genome Biol; 2016 Jun; 17(1):132. PubMed ID: 27323842
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer.
    Zhang Q; Jun SR; Leuze M; Ussery D; Nookaew I
    Sci Rep; 2017 Jan; 7():40712. PubMed ID: 28102365
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations.
    Lee AY; Lee CS; Van Gelder RN
    BMC Bioinformatics; 2016 Jul; 17():292. PubMed ID: 27465705
    [TBL] [Abstract][Full Text] [Related]  

  • 48. VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment.
    Raju RS; Al Nahid A; Chondrow Dev P; Islam R
    Genomics; 2022 Jul; 114(4):110414. PubMed ID: 35718090
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource.
    Lefkowitz EJ; Upton C; Changayil SS; Buck C; Traktman P; Buller RM
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D311-6. PubMed ID: 15608205
    [TBL] [Abstract][Full Text] [Related]  

  • 50. CheckV assesses the quality and completeness of metagenome-assembled viral genomes.
    Nayfach S; Camargo AP; Schulz F; Eloe-Fadrosh E; Roux S; Kyrpides NC
    Nat Biotechnol; 2021 May; 39(5):578-585. PubMed ID: 33349699
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses.
    Tangherlini M; Dell'Anno A; Zeigler Allen L; Riccioni G; Corinaldesi C
    Sci Rep; 2016 Jun; 6():28428. PubMed ID: 27329207
    [TBL] [Abstract][Full Text] [Related]  

  • 52. ViralRecall-A Flexible Command-Line Tool for the Detection of Giant Virus Signatures in 'Omic Data.
    Aylward FO; Moniruzzaman M
    Viruses; 2021 Jan; 13(2):. PubMed ID: 33498458
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Profile hidden Markov models for the detection of viruses within metagenomic sequence data.
    Skewes-Cox P; Sharpton TJ; Pollard KS; DeRisi JL
    PLoS One; 2014; 9(8):e105067. PubMed ID: 25140992
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Expanding the taxonomic range in the fecal metagenome.
    Allnutt TR; Roth-Schulze AJ; Harrison LC
    BMC Bioinformatics; 2021 Jun; 22(1):312. PubMed ID: 34107881
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Single-virus genomics and beyond.
    Martínez Martínez J; Martinez-Hernandez F; Martinez-Garcia M
    Nat Rev Microbiol; 2020 Dec; 18(12):705-716. PubMed ID: 33024311
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Web Resources for Metagenomics Studies.
    Dudhagara P; Bhavsar S; Bhagat C; Ghelani A; Bhatt S; Patel R
    Genomics Proteomics Bioinformatics; 2015 Oct; 13(5):296-303. PubMed ID: 26602607
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.
    Lin HH; Liao YC
    Sci Rep; 2016 Apr; 6():24175. PubMed ID: 27067514
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Elviz - exploration of metagenome assemblies with an interactive visualization tool.
    Cantor M; Nordberg H; Smirnova T; Hess M; Tringe S; Dubchak I
    BMC Bioinformatics; 2015 Apr; 16(1):130. PubMed ID: 25928663
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome Analysis.
    Chen J; Sun Y; Yan X; Ren Z; Wang G; Liu Y; Zhao Z; Yi L; Tu C; He B
    mSystems; 2022 Dec; 7(6):e0090722. PubMed ID: 36286492
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.