These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

140 related articles for article (PubMed ID: 30131898)

  • 1. Fluidigm2PURC: Automated processing and haplotype inference for double-barcoded PCR amplicons.
    Blischak PD; Latvis M; Morales-Briones DF; Johnson JC; Di Stilio VS; Wolfe AD; Tank DC
    Appl Plant Sci; 2018 Jun; 6(6):e01156. PubMed ID: 30131898
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PURC Provides Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem.
    Schafran P; Li FW; Rothfels CJ
    Methods Mol Biol; 2023; 2545():189-206. PubMed ID: 36720814
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing.
    Rothfels CJ; Pryer KM; Li FW
    New Phytol; 2017 Jan; 213(1):413-429. PubMed ID: 27463214
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TriPoly: haplotype estimation for polyploids using sequencing data of related individuals.
    Motazedi E; de Ridder D; Finkers R; Baldwin S; Thomson S; Monaghan K; Maliepaard C
    Bioinformatics; 2018 Nov; 34(22):3864-3872. PubMed ID: 29868858
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data.
    Katta MA; Khan AW; Doddamani D; Thudi M; Varshney RK
    PLoS One; 2015; 10(10):e0139868. PubMed ID: 26460497
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data.
    Blischak PD; Kubatko LS; Wolfe AD
    Bioinformatics; 2018 Feb; 34(3):407-415. PubMed ID: 29028881
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ICBdocker: a Docker image for proteome annotation and visualization.
    Bordin N; Devos DP
    Bioinformatics; 2018 Nov; 34(22):3937-3938. PubMed ID: 29931249
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids.
    Hashemi A; Zhu B; Vikalo H
    BMC Genomics; 2018 Mar; 19(Suppl 4):191. PubMed ID: 29589554
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Overlap graph-based generation of haplotigs for diploids and polyploids.
    Baaijens JA; Schönhuth A
    Bioinformatics; 2019 Nov; 35(21):4281-4289. PubMed ID: 30994902
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PhyloHerb: A high-throughput phylogenomic pipeline for processing genome skimming data.
    Cai L; Zhang H; Davis CC
    Appl Plant Sci; 2022; 10(3):e11475. PubMed ID: 35774988
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
    Welzel M; Lange A; Heider D; Schwarz M; Freisleben B; Jensen M; Boenigk J; Beisser D
    BMC Bioinformatics; 2020 Nov; 21(1):526. PubMed ID: 33198651
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study.
    Wang Z; Ma'ayan A
    F1000Res; 2016; 5():1574. PubMed ID: 27583132
    [TBL] [Abstract][Full Text] [Related]  

  • 13. VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing.
    Bolognini D; Sanders A; Korbel JO; Magi A; Benes V; Rausch T
    Bioinformatics; 2020 Feb; 36(4):1267-1269. PubMed ID: 31589307
    [TBL] [Abstract][Full Text] [Related]  

  • 14. UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.
    Qi P; Gimode D; Saha D; Schröder S; Chakraborty D; Wang X; Dida MM; Malmberg RL; Devos KM
    BMC Plant Biol; 2018 Jun; 18(1):117. PubMed ID: 29902967
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computational Analysis of AmpSeq Data for Targeted, High-Throughput Genotyping of Amplicons.
    Fresnedo-Ramírez J; Yang S; Sun Q; Karn A; Reisch BI; Cadle-Davidson L
    Front Plant Sci; 2019; 10():599. PubMed ID: 31156670
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions.
    Dauphin B; Grant JR; Farrar DR; Rothfels CJ
    Mol Phylogenet Evol; 2018 Mar; 120():342-353. PubMed ID: 29242164
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments.
    Andermann T; Cano Á; Zizka A; Bacon C; Antonelli A
    PeerJ; 2018; 6():e5175. PubMed ID: 30023140
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT.
    Neigenfind J; Gyetvai G; Basekow R; Diehl S; Achenbach U; Gebhardt C; Selbig J; Kersten B
    BMC Genomics; 2008 Jul; 9():356. PubMed ID: 18667059
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data.
    Rosenfeld AM; Meng W; Luning Prak ET; Hershberg U
    Front Immunol; 2018; 9():2107. PubMed ID: 30298069
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SangeR: the high-throughput Sanger sequencing analysis pipeline.
    Schmid K; Dohmen H; Ritschel N; Selignow C; Zohner J; Sehring J; Acker T; Amsel D
    Bioinform Adv; 2022; 2(1):vbac009. PubMed ID: 36699395
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.