These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
260 related articles for article (PubMed ID: 30137486)
1. Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655. Gao Y; Yurkovich JT; Seo SW; Kabimoldayev I; Dräger A; Chen K; Sastry AV; Fang X; Mih N; Yang L; Eichner J; Cho BK; Kim D; Palsson BO Nucleic Acids Res; 2018 Nov; 46(20):10682-10696. PubMed ID: 30137486 [TBL] [Abstract][Full Text] [Related]
2. Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo. Gao Y; Lim HG; Verkler H; Szubin R; Quach D; Rodionova I; Chen K; Yurkovich JT; Cho BK; Palsson BO Nucleic Acids Res; 2021 Sep; 49(17):9696-9710. PubMed ID: 34428301 [TBL] [Abstract][Full Text] [Related]
3. Novel regulators of the Ogasawara H; Ishizuka T; Hotta S; Aoki M; Shimada T; Ishihama A Microbiology (Reading); 2020 Sep; 166(9):880-890. PubMed ID: 32649279 [TBL] [Abstract][Full Text] [Related]
4. Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12. Shimada T; Yokoyama Y; Anzai T; Yamamoto K; Ishihama A Sci Rep; 2019 Dec; 9(1):20415. PubMed ID: 31892694 [TBL] [Abstract][Full Text] [Related]
5. Single-target regulators form a minor group of transcription factors in Escherichia coli K-12. Shimada T; Ogasawara H; Ishihama A Nucleic Acids Res; 2018 May; 46(8):3921-3936. PubMed ID: 29529243 [TBL] [Abstract][Full Text] [Related]
6. Hierarchy of transcription factor network in Escherichia coli K-12: H-NS-mediated silencing and Anti-silencing by global regulators. Ishihama A; Shimada T FEMS Microbiol Rev; 2021 Nov; 45(6):. PubMed ID: 34196371 [TBL] [Abstract][Full Text] [Related]
7. The functional landscape bound to the transcription factors of Escherichia coli K-12. Pérez-Rueda E; Tenorio-Salgado S; Huerta-Saquero A; Balderas-Martínez YI; Moreno-Hagelsieb G Comput Biol Chem; 2015 Oct; 58():93-103. PubMed ID: 26094112 [TBL] [Abstract][Full Text] [Related]
8. Regulatory role of XynR (YagI) in catabolism of xylonate in Escherichia coli K-12. Shimada T; Momiyama E; Yamanaka Y; Watanabe H; Yamamoto K; Ishihama A FEMS Microbiol Lett; 2017 Dec; 364(22):. PubMed ID: 29087459 [TBL] [Abstract][Full Text] [Related]
9. The PurR regulon in Escherichia coli K-12 MG1655. Cho BK; Federowicz SA; Embree M; Park YS; Kim D; Palsson BØ Nucleic Acids Res; 2011 Aug; 39(15):6456-64. PubMed ID: 21572102 [TBL] [Abstract][Full Text] [Related]
10. Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli. Balaji S; Babu MM; Aravind L J Mol Biol; 2007 Sep; 372(4):1108-1122. PubMed ID: 17706247 [TBL] [Abstract][Full Text] [Related]
11. Effect of iclR and arcA knockouts on biomass formation and metabolic fluxes in Escherichia coli K12 and its implications on understanding the metabolism of Escherichia coli BL21 (DE3). Waegeman H; Beauprez J; Moens H; Maertens J; De Mey M; Foulquié-Moreno MR; Heijnen JJ; Charlier D; Soetaert W BMC Microbiol; 2011 Apr; 11():70. PubMed ID: 21481254 [TBL] [Abstract][Full Text] [Related]
12. Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli. Gagarinova A; Hosseinnia A; Rahmatbakhsh M; Istace Z; Phanse S; Moutaoufik MT; Zilocchi M; Zhang Q; Aoki H; Jessulat M; Kim S; Aly KA; Babu M Nat Commun; 2022 Jul; 13(1):4085. PubMed ID: 35835781 [TBL] [Abstract][Full Text] [Related]
13. Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655. Seo SW; Gao Y; Kim D; Szubin R; Yang J; Cho BK; Palsson BO Sci Rep; 2017 May; 7(1):2181. PubMed ID: 28526842 [TBL] [Abstract][Full Text] [Related]
14. Genomic SELEX Screening of Regulatory Targets of Transcription Factors. Shimada T; Ogasawara H; Kobayashi I; Ishihama A Methods Mol Biol; 2024; 2819():77-102. PubMed ID: 39028503 [TBL] [Abstract][Full Text] [Related]
15. Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12. Prieto AI; Kahramanoglou C; Ali RM; Fraser GM; Seshasayee AS; Luscombe NM Nucleic Acids Res; 2012 Apr; 40(8):3524-37. PubMed ID: 22180530 [TBL] [Abstract][Full Text] [Related]
16. Principles of transcriptional regulation and evolution of the metabolic system in E. coli. Seshasayee AS; Fraser GM; Babu MM; Luscombe NM Genome Res; 2009 Jan; 19(1):79-91. PubMed ID: 18836036 [TBL] [Abstract][Full Text] [Related]
17. Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. Cho BK; Barrett CL; Knight EM; Park YS; Palsson BØ Proc Natl Acad Sci U S A; 2008 Dec; 105(49):19462-7. PubMed ID: 19052235 [TBL] [Abstract][Full Text] [Related]
18. Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli. Seo SW; Kim D; Latif H; O'Brien EJ; Szubin R; Palsson BO Nat Commun; 2014 Sep; 5():4910. PubMed ID: 25222563 [TBL] [Abstract][Full Text] [Related]
19. Mechanism for regulation of the putrescine utilization pathway by the transcription factor PuuR in Escherichia coli K-12. Nemoto N; Kurihara S; Kitahara Y; Asada K; Kato K; Suzuki H J Bacteriol; 2012 Jul; 194(13):3437-47. PubMed ID: 22522900 [TBL] [Abstract][Full Text] [Related]
20. Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655. Seo SW; Kim D; Szubin R; Palsson BO Cell Rep; 2015 Aug; 12(8):1289-99. PubMed ID: 26279566 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]