176 related articles for article (PubMed ID: 30138483)
1. Re-annotation of 12,495 prokaryotic 16S rRNA 3' ends and analysis of Shine-Dalgarno and anti-Shine-Dalgarno sequences.
Amin MR; Yurovsky A; Chen Y; Skiena S; Futcher B
PLoS One; 2018; 13(8):e0202767. PubMed ID: 30138483
[TBL] [Abstract][Full Text] [Related]
2. Prokaryotic coding regions have little if any specific depletion of Shine-Dalgarno motifs.
Yurovsky A; Amin MR; Gardin J; Chen Y; Skiena S; Futcher B
PLoS One; 2018; 13(8):e0202768. PubMed ID: 30138485
[TBL] [Abstract][Full Text] [Related]
3. RNA-Seq-Based Analysis Reveals Heterogeneity in Mature 16S rRNA 3' Termini and Extended Anti-Shine-Dalgarno Motifs in Bacterial Species.
Silke JR; Wei Y; Xia X
G3 (Bethesda); 2018 Dec; 8(12):3973-3979. PubMed ID: 30355764
[TBL] [Abstract][Full Text] [Related]
4. Unraveling the plasticity of translation initiation in prokaryotes: Beyond the invariant Shine-Dalgarno sequence.
Estrada K; Garciarrubio A; Merino E
PLoS One; 2024; 19(1):e0289914. PubMed ID: 38206950
[TBL] [Abstract][Full Text] [Related]
5. Predicting Shine-Dalgarno sequence locations exposes genome annotation errors.
Starmer J; Stomp A; Vouk M; Bitzer D
PLoS Comput Biol; 2006 May; 2(5):e57. PubMed ID: 16710451
[TBL] [Abstract][Full Text] [Related]
6. The anti-Shine-Dalgarno region in Escherichia coli 16S ribosomal RNA is not essential for the correct selection of translational starts.
Melançon P; Leclerc D; Destroismaisons N; Brakier-Gingras L
Biochemistry; 1990 Apr; 29(13):3402-7. PubMed ID: 2185838
[TBL] [Abstract][Full Text] [Related]
7. Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes.
Osada Y; Saito R; Tomita M
Bioinformatics; 1999; 15(7-8):578-81. PubMed ID: 10487865
[TBL] [Abstract][Full Text] [Related]
8. The Frequency of Internal Shine-Dalgarno-like Motifs in Prokaryotes.
Diwan GD; Agashe D
Genome Biol Evol; 2016 Jun; 8(6):1722-33. PubMed ID: 27189998
[TBL] [Abstract][Full Text] [Related]
9. Portable Shine-Dalgarno regions; nucleotides between the Shine-Dalgarno sequence and the start codon affect the translation efficiency.
de Boer HA; Comstock LJ; Hui A; Wong E; Vasser M
Gene Amplif Anal; 1983; 3():103-16. PubMed ID: 6086029
[TBL] [Abstract][Full Text] [Related]
10. rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift.
Larsen B; Wills NM; Gesteland RF; Atkins JF
J Bacteriol; 1994 Nov; 176(22):6842-51. PubMed ID: 7961443
[TBL] [Abstract][Full Text] [Related]
11. Shine-Dalgarno Sequences Play an Essential Role in the Translation of Plastid mRNAs in Tobacco.
Scharff LB; Ehrnthaler M; Janowski M; Childs LH; Hasse C; Gremmels J; Ruf S; Zoschke R; Bock R
Plant Cell; 2017 Dec; 29(12):3085-3101. PubMed ID: 29133466
[TBL] [Abstract][Full Text] [Related]
12. Shine-Dalgarno sequence of bacteriophage T4: GAGG prevails in early genes.
Malys N
Mol Biol Rep; 2012 Jan; 39(1):33-9. PubMed ID: 21533668
[TBL] [Abstract][Full Text] [Related]
13. RiboGrove: a database of full-length prokaryotic 16S rRNA genes derived from completely assembled genomes.
Sikolenko MA; Valentovich LN
Res Microbiol; 2022; 173(4-5):103936. PubMed ID: 35217168
[TBL] [Abstract][Full Text] [Related]
14. Elucidating the 16S rRNA 3' boundaries and defining optimal SD/aSD pairing in Escherichia coli and Bacillus subtilis using RNA-Seq data.
Wei Y; Silke JR; Xia X
Sci Rep; 2017 Dec; 7(1):17639. PubMed ID: 29247194
[TBL] [Abstract][Full Text] [Related]
15. Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes.
Nakagawa S; Niimura Y; Gojobori T
Nucleic Acids Res; 2017 Apr; 45(7):3922-3931. PubMed ID: 28334743
[TBL] [Abstract][Full Text] [Related]
16. Solving the Riddle of the Evolution of Shine-Dalgarno Based Translation in Chloroplasts.
Weiner I; Shahar N; Marco P; Yacoby I; Tuller T
Mol Biol Evol; 2019 Dec; 36(12):2854-2860. PubMed ID: 31503284
[TBL] [Abstract][Full Text] [Related]
17. Escherichia coli mRNAs with strong Shine/Dalgarno sequences also contain 5' end sequences complementary to domain # 17 on the 16S ribosomal RNA.
Golshani A; Krogan NJ; Xu J; Pacal M; Yang XC; Ivanov I; Providenti MA; Ganoza MC; Ivanov IG; AbouHaidar MG
Biochem Biophys Res Commun; 2004 Apr; 316(4):978-83. PubMed ID: 15044080
[TBL] [Abstract][Full Text] [Related]
18. Haloferax volcanii, a prokaryotic species that does not use the Shine Dalgarno mechanism for translation initiation at 5'-UTRs.
Kramer P; Gäbel K; Pfeiffer F; Soppa J
PLoS One; 2014; 9(4):e94979. PubMed ID: 24733188
[TBL] [Abstract][Full Text] [Related]
19. A hybrid promoter and portable Shine-Dalgarno regions of Escherichia coli.
De Boer HA; Comstock LJ; Hui A; Wong E; Vasser M
Biochem Soc Symp; 1983; 48():233-44. PubMed ID: 6400483
[TBL] [Abstract][Full Text] [Related]
20. [Extensive complementarity of the Shine-Dalgarno region and 3'-terminal sequence of 16S ribosomal RNA is inefficient for translation in vivo].
Komarova AV; Chufistova LS; Supina EV; Boni IV
Bioorg Khim; 2001; 27(4):282-90. PubMed ID: 11558262
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
