BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

189 related articles for article (PubMed ID: 30165507)

  • 21. SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.
    Pickett BD; Karlinsey SM; Penrod CE; Cormier MJ; Ebbert MT; Shiozawa DK; Whipple CJ; Ridge PG
    Bioinformatics; 2016 Sep; 32(17):2707-9. PubMed ID: 27170037
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Dante: genotyping of known complex and expanded short tandem repeats.
    Budiš J; Kucharík M; Ďuriš F; Gazdarica J; Zrubcová M; Ficek A; Szemes T; Brejová B; Radvanszky J
    Bioinformatics; 2019 Apr; 35(8):1310-1317. PubMed ID: 30203023
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Chromatin accessibility prediction via a hybrid deep convolutional neural network.
    Liu Q; Xia F; Yin Q; Jiang R
    Bioinformatics; 2018 Mar; 34(5):732-738. PubMed ID: 29069282
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.
    Boeva V; Regnier M; Papatsenko D; Makeev V
    Bioinformatics; 2006 Mar; 22(6):676-84. PubMed ID: 16403795
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Metagenomic binning through low-density hashing.
    Luo Y; Yu YW; Zeng J; Berger B; Peng J
    Bioinformatics; 2019 Jan; 35(2):219-226. PubMed ID: 30010790
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance.
    Šošic M; Šikic M
    Bioinformatics; 2017 May; 33(9):1394-1395. PubMed ID: 28453688
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Genome-by-genome approach for fast bacterial genealogical relationship evaluation.
    Zhang J; Xiong Y; Rogers L; Carter GP; French N
    Bioinformatics; 2018 Sep; 34(17):3025-3027. PubMed ID: 29608746
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models.
    Velasco A; James BT; Wells VD; Girgis HZ
    Bioinformatics; 2020 Jan; 36(2):380-387. PubMed ID: 31287494
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
    Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
    Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Informational and linguistic analysis of large genomic sequence collections via efficient Hadoop cluster algorithms.
    Ferraro Petrillo U; Roscigno G; Cattaneo G; Giancarlo R
    Bioinformatics; 2018 Jun; 34(11):1826-1833. PubMed ID: 29342232
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
    Chandak S; Tatwawadi K; Weissman T
    Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
    [TBL] [Abstract][Full Text] [Related]  

  • 32. PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes.
    Chen GL; Chang YJ; Hsueh CH
    Bioinformatics; 2013 Nov; 29(21):2683-9. PubMed ID: 23958725
    [TBL] [Abstract][Full Text] [Related]  

  • 33. GTC: how to maintain huge genotype collections in a compressed form.
    Danek A; Deorowicz S
    Bioinformatics; 2018 Jun; 34(11):1834-1840. PubMed ID: 29351600
    [TBL] [Abstract][Full Text] [Related]  

  • 34. STAR: an algorithm to Search for Tandem Approximate Repeats.
    Delgrange O; Rivals E
    Bioinformatics; 2004 Nov; 20(16):2812-20. PubMed ID: 15180940
    [TBL] [Abstract][Full Text] [Related]  

  • 35. ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
    Martyushenko N; Almaas E
    Bioinformatics; 2020 Mar; 36(5):1644-1646. PubMed ID: 31598631
    [TBL] [Abstract][Full Text] [Related]  

  • 36. YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.
    Quang D; Guan Y; Parker SCJ
    Bioinformatics; 2018 Oct; 34(20):3578-3580. PubMed ID: 29790915
    [TBL] [Abstract][Full Text] [Related]  

  • 37. CSAR: a contig scaffolding tool using algebraic rearrangements.
    Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
    Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
    [TBL] [Abstract][Full Text] [Related]  

  • 38. MOSGA: Modular Open-Source Genome Annotator.
    Martin R; Hackl T; Hattab G; Fischer MG; Heider D
    Bioinformatics; 2021 Apr; 36(22-23):5514-5515. PubMed ID: 33258916
    [TBL] [Abstract][Full Text] [Related]  

  • 39. VIRULIGN: fast codon-correct alignment and annotation of viral genomes.
    Libin PJK; Deforche K; Abecasis AB; Theys K
    Bioinformatics; 2019 May; 35(10):1763-1765. PubMed ID: 30295730
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Complete Sequence Construction of the Highly Repetitive Ribosomal RNA Gene Repeats in Eukaryotes Using Whole Genome Sequence Data.
    Agrawal S; Ganley AR
    Methods Mol Biol; 2016; 1455():161-81. PubMed ID: 27576718
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.