189 related articles for article (PubMed ID: 30165507)
41. Krait: an ultrafast tool for genome-wide survey of microsatellites and primer design.
Du L; Zhang C; Liu Q; Zhang X; Yue B; Hancock J
Bioinformatics; 2018 Feb; 34(4):681-683. PubMed ID: 29048524
[TBL] [Abstract][Full Text] [Related]
42. Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions.
Arthur R; O'Connell J; Schulz-Trieglaff O; Cox AJ
Bioinformatics; 2016 Aug; 32(15):2306-12. PubMed ID: 27153730
[TBL] [Abstract][Full Text] [Related]
43. ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions.
Dolzhenko E; Deshpande V; Schlesinger F; Krusche P; Petrovski R; Chen S; Emig-Agius D; Gross A; Narzisi G; Bowman B; Scheffler K; van Vugt JJFA; French C; Sanchis-Juan A; Ibáñez K; Tucci A; Lajoie BR; Veldink JH; Raymond FL; Taft RJ; Bentley DR; Eberle MA
Bioinformatics; 2019 Nov; 35(22):4754-4756. PubMed ID: 31134279
[TBL] [Abstract][Full Text] [Related]
44. Squeakr: an exact and approximate k-mer counting system.
Pandey P; Bender MA; Johnson R; Patro R; Berger B
Bioinformatics; 2018 Feb; 34(4):568-575. PubMed ID: 29444235
[TBL] [Abstract][Full Text] [Related]
45. PEATH: single-individual haplotyping by a probabilistic evolutionary algorithm with toggling.
Na JC; Lee JC; Rhee JK; Shin SY
Bioinformatics; 2018 Jun; 34(11):1801-1807. PubMed ID: 29342247
[TBL] [Abstract][Full Text] [Related]
46. SONiCS: PCR stutter noise correction in genome-scale microsatellites.
Kedzierska KZ; Gerber L; Cagnazzi D; Krützen M; Ratan A; Kistler L
Bioinformatics; 2018 Dec; 34(23):4115-4117. PubMed ID: 29931218
[TBL] [Abstract][Full Text] [Related]
47. XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences.
Newman AM; Cooper JB
BMC Bioinformatics; 2007 Oct; 8():382. PubMed ID: 17931424
[TBL] [Abstract][Full Text] [Related]
48. Phylonium: fast estimation of evolutionary distances from large samples of similar genomes.
Klötzl F; Haubold B
Bioinformatics; 2020 Apr; 36(7):2040-2046. PubMed ID: 31790149
[TBL] [Abstract][Full Text] [Related]
49. kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.
Jiang P; Luo J; Wang Y; Deng P; Schmidt B; Tang X; Chen N; Wong L; Zhao L
Bioinformatics; 2019 Dec; 35(23):4871-4878. PubMed ID: 31038666
[TBL] [Abstract][Full Text] [Related]
50. DeepSymmetry: using 3D convolutional networks for identification of tandem repeats and internal symmetries in protein structures.
Pagès G; Grudinin S
Bioinformatics; 2019 Dec; 35(24):5113-5120. PubMed ID: 31161198
[TBL] [Abstract][Full Text] [Related]
51. HyAsP, a greedy tool for plasmids identification.
Müller R; Chauve C
Bioinformatics; 2019 Nov; 35(21):4436-4439. PubMed ID: 31116364
[TBL] [Abstract][Full Text] [Related]
52. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
Haghshenas E; Sahinalp SC; Hach F
Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
[TBL] [Abstract][Full Text] [Related]
53. The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices.
Enache OM; Lahr DL; Natoli TE; Litichevskiy L; Wadden D; Flynn C; Gould J; Asiedu JK; Narayan R; Subramanian A
Bioinformatics; 2019 Apr; 35(8):1427-1429. PubMed ID: 30203022
[TBL] [Abstract][Full Text] [Related]
54. STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data.
Tang H; Nzabarushimana E
BMC Bioinformatics; 2017 Oct; 18(Suppl 11):398. PubMed ID: 28984185
[TBL] [Abstract][Full Text] [Related]
55. ASGART: fast and parallel genome scale segmental duplications mapping.
Delehelle F; Cussat-Blanc S; Alliot JM; Luga H; Balaresque P
Bioinformatics; 2018 Aug; 34(16):2708-2714. PubMed ID: 30101303
[TBL] [Abstract][Full Text] [Related]
56. REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences.
Kamel M; Kastano K; Mier P; Andrade-Navarro MA
J Mol Biol; 2021 May; 433(11):166895. PubMed ID: 33972020
[TBL] [Abstract][Full Text] [Related]
57. Tandem repeats over the edit distance.
Sokol D; Benson G; Tojeira J
Bioinformatics; 2007 Jan; 23(2):e30-5. PubMed ID: 17237101
[TBL] [Abstract][Full Text] [Related]
58. Deep conservation of human protein tandem repeats within the eukaryotes.
Schaper E; Gascuel O; Anisimova M
Mol Biol Evol; 2014 May; 31(5):1132-48. PubMed ID: 24497029
[TBL] [Abstract][Full Text] [Related]
59. IgSimulator: a versatile immunosequencing simulator.
Safonova Y; Lapidus A; Lill J
Bioinformatics; 2015 Oct; 31(19):3213-5. PubMed ID: 26007226
[TBL] [Abstract][Full Text] [Related]
60. Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.
Krejci A; Hupp TR; Lexa M; Vojtesek B; Muller P
Bioinformatics; 2016 Jan; 32(1):9-16. PubMed ID: 26342231
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
