These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

248 related articles for article (PubMed ID: 30165550)

  • 1. Structural dynamics of propeller loop: towards folding of RNA G-quadruplex.
    Havrila M; Stadlbauer P; Kührová P; Banáš P; Mergny JL; Otyepka M; Šponer J
    Nucleic Acids Res; 2018 Sep; 46(17):8754-8771. PubMed ID: 30165550
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Folding of guanine quadruplex molecules-funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies.
    Šponer J; Bussi G; Stadlbauer P; Kührová P; Banáš P; Islam B; Haider S; Neidle S; Otyepka M
    Biochim Biophys Acta Gen Subj; 2017 May; 1861(5 Pt B):1246-1263. PubMed ID: 27979677
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes.
    Stadlbauer P; Kührová P; Vicherek L; Banáš P; Otyepka M; Trantírek L; Šponer J
    Nucleic Acids Res; 2019 Aug; 47(14):7276-7293. PubMed ID: 31318975
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics simulations reveal the parallel stranded d(GGGA)
    Pokorná P; Mlýnský V; Bussi G; Šponer J; Stadlbauer P
    Int J Biol Macromol; 2024 Mar; 261(Pt 2):129712. PubMed ID: 38286387
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations.
    Stadlbauer P; Kührová P; Banáš P; Koča J; Bussi G; Trantírek L; Otyepka M; Šponer J
    Nucleic Acids Res; 2015 Nov; 43(20):9626-44. PubMed ID: 26433223
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations.
    Stadlbauer P; Trantírek L; Cheatham TE; Koča J; Sponer J
    Biochimie; 2014 Oct; 105():22-35. PubMed ID: 25038568
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations.
    Zhang Z; Mlýnský V; Krepl M; Šponer J; Stadlbauer P
    J Chem Inf Model; 2024 May; 64(9):3896-3911. PubMed ID: 38630447
    [TBL] [Abstract][Full Text] [Related]  

  • 8. G-quadruplex DNA: A Longer Story.
    Monsen RC; Trent JO; Chaires JB
    Acc Chem Res; 2022 Nov; 55(22):3242-3252. PubMed ID: 36282946
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Insilico direct folding of thrombin-binding aptamer G-quadruplex at all-atom level.
    Yang C; Kulkarni M; Lim M; Pak Y
    Nucleic Acids Res; 2017 Dec; 45(22):12648-12656. PubMed ID: 29112755
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Same fold, different properties: polarizable molecular dynamics simulations of telomeric and TERRA G-quadruplexes.
    Lemkul JA
    Nucleic Acids Res; 2020 Jan; 48(2):561-575. PubMed ID: 31807754
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Effect of Monovalent Ion Parameters on Molecular Dynamics Simulations of G-Quadruplexes.
    Havrila M; Stadlbauer P; Islam B; Otyepka M; Šponer J
    J Chem Theory Comput; 2017 Aug; 13(8):3911-3926. PubMed ID: 28657760
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Computational Probing of the Folding Mechanism of Human Telomeric G-Quadruplex DNA.
    Kim H; Kim E; Pak Y
    J Chem Inf Model; 2023 Oct; 63(20):6366-6375. PubMed ID: 37782649
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes.
    Stadlbauer P; Mazzanti L; Cragnolini T; Wales DJ; Derreumaux P; Pasquali S; Šponer J
    J Chem Theory Comput; 2016 Dec; 12(12):6077-6097. PubMed ID: 27767303
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structural Dynamics of Lateral and Diagonal Loops of Human Telomeric G-Quadruplexes in Extended MD Simulations.
    Islam B; Stadlbauer P; Krepl M; Havrila M; Haider S; Sponer J
    J Chem Theory Comput; 2018 Oct; 14(10):5011-5026. PubMed ID: 30183284
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Stability of Two-Quartet G-Quadruplexes and Their Dimers in Atomistic Simulations.
    Islam B; Stadlbauer P; Vorlíčková M; Mergny JL; Otyepka M; Šponer J
    J Chem Theory Comput; 2020 Jun; 16(6):3447-3463. PubMed ID: 32163706
    [TBL] [Abstract][Full Text] [Related]  

  • 16. G-quadruplex dynamics.
    Harkness RW; Mittermaier AK
    Biochim Biophys Acta Proteins Proteom; 2017 Nov; 1865(11 Pt B):1544-1554. PubMed ID: 28642152
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations.
    Islam B; Stadlbauer P; Gil-Ley A; Pérez-Hernández G; Haider S; Neidle S; Bussi G; Banas P; Otyepka M; Sponer J
    J Chem Theory Comput; 2017 Jun; 13(6):2458-2480. PubMed ID: 28475322
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Direct measurement of sequential folding pathway and energy landscape of human telomeric G-quadruplex structures.
    Li W; Hou XM; Wang PY; Xi XG; Li M
    J Am Chem Soc; 2013 May; 135(17):6423-6. PubMed ID: 23631592
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA G-quadruplex folding is a multi-pathway process driven by conformational entropy.
    Ugrina M; Burkhart I; Müller D; Schwalbe H; Schwierz N
    Nucleic Acids Res; 2024 Jan; 52(1):87-100. PubMed ID: 37986217
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations.
    Stadlbauer P; Mlýnský V; Krepl M; Šponer J
    J Chem Inf Model; 2023 Aug; 63(15):4716-4731. PubMed ID: 37458574
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.