1200 related articles for article (PubMed ID: 30165813)
1. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
Rotimi AM; Pierneef R; Reva ON
BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
[TBL] [Abstract][Full Text] [Related]
2. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
3. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
4. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
Wang Y; Leung H; Yiu S; Chin F
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
[TBL] [Abstract][Full Text] [Related]
5. A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes.
Gkanogiannis A; Gazut S; Salanoubat M; Kanj S; Brüls T
BMC Bioinformatics; 2016 Aug; 17(1):311. PubMed ID: 27542753
[TBL] [Abstract][Full Text] [Related]
6. Metagenome Assembly and Contig Assignment.
Zhang Q
Methods Mol Biol; 2018; 1849():179-192. PubMed ID: 30298255
[TBL] [Abstract][Full Text] [Related]
7. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.
Beaulaurier J; Zhu S; Deikus G; Mogno I; Zhang XS; Davis-Richardson A; Canepa R; Triplett EW; Faith JJ; Sebra R; Schadt EE; Fang G
Nat Biotechnol; 2018 Jan; 36(1):61-69. PubMed ID: 29227468
[TBL] [Abstract][Full Text] [Related]
8. Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.
Bengtsson-Palme J; Richardson RT; Meola M; Wurzbacher C; Tremblay ÉD; Thorell K; Kanger K; Eriksson KM; Bilodeau GJ; Johnson RM; Hartmann M; Nilsson RH
Bioinformatics; 2018 Dec; 34(23):4027-4033. PubMed ID: 29912385
[TBL] [Abstract][Full Text] [Related]
9. Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets.
Yue Y; Huang H; Qi Z; Dou HM; Liu XY; Han TF; Chen Y; Song XJ; Zhang YH; Tu J
BMC Bioinformatics; 2020 Jul; 21(1):334. PubMed ID: 32723290
[TBL] [Abstract][Full Text] [Related]
10. CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes.
Benavides A; Isaza JP; Niño-García JP; Alzate JF; Cabarcas F
BMC Genomics; 2018 Dec; 19(Suppl 8):858. PubMed ID: 30537931
[TBL] [Abstract][Full Text] [Related]
11. CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.
Herath D; Tang SL; Tandon K; Ackland D; Halgamuge SK
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):571. PubMed ID: 29297295
[TBL] [Abstract][Full Text] [Related]
12. Evaluating the Quantitative Capabilities of Metagenomic Analysis Software.
Kerepesi C; Grolmusz V
Curr Microbiol; 2016 May; 72(5):612-6. PubMed ID: 26831696
[TBL] [Abstract][Full Text] [Related]
13. Deep learning models for bacteria taxonomic classification of metagenomic data.
Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
[TBL] [Abstract][Full Text] [Related]
14. Evaluating
Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
[TBL] [Abstract][Full Text] [Related]
15. MBMC: An Effective Markov Chain Approach for Binning Metagenomic Reads from Environmental Shotgun Sequencing Projects.
Wang Y; Hu H; Li X
OMICS; 2016 Aug; 20(8):470-9. PubMed ID: 27447888
[TBL] [Abstract][Full Text] [Related]
16. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.
Huson DH; Albrecht B; Bağcı C; Bessarab I; Górska A; Jolic D; Williams RBH
Biol Direct; 2018 Apr; 13(1):6. PubMed ID: 29678199
[TBL] [Abstract][Full Text] [Related]
17. ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.
Broeksema B; Calusinska M; McGee F; Winter K; Bongiovanni F; Goux X; Wilmes P; Delfosse P; Ghoniem M
BMC Bioinformatics; 2017 May; 18(1):233. PubMed ID: 28464793
[TBL] [Abstract][Full Text] [Related]
18. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
McIntyre ABR; Ounit R; Afshinnekoo E; Prill RJ; Hénaff E; Alexander N; Minot SS; Danko D; Foox J; Ahsanuddin S; Tighe S; Hasan NA; Subramanian P; Moffat K; Levy S; Lonardi S; Greenfield N; Colwell RR; Rosen GL; Mason CE
Genome Biol; 2017 Sep; 18(1):182. PubMed ID: 28934964
[TBL] [Abstract][Full Text] [Related]
19. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.
Lin HH; Liao YC
Sci Rep; 2016 Apr; 6():24175. PubMed ID: 27067514
[TBL] [Abstract][Full Text] [Related]
20. Genome-resolved metagenomics using environmental and clinical samples.
Kayani MUR; Huang W; Feng R; Chen L
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758906
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]