These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. Direct interaction network inference for compositional data via codaloss. Chen L; He S; Zhai Y; Deng M J Bioinform Comput Biol; 2020 Dec; 18(6):2050037. PubMed ID: 33106076 [TBL] [Abstract][Full Text] [Related]
7. fastCCLasso: a fast and efficient algorithm for estimating correlation matrix from compositional data. Zhang S; Fang H; Hu T Bioinformatics; 2024 May; 40(5):. PubMed ID: 38730540 [TBL] [Abstract][Full Text] [Related]
8. A divide-and-conquer method for scalable phylogenetic network inference from multilocus data. Zhu J; Liu X; Ogilvie HA; Nakhleh LK Bioinformatics; 2019 Jul; 35(14):i370-i378. PubMed ID: 31510688 [TBL] [Abstract][Full Text] [Related]
9. Mian: interactive web-based microbiome data table visualization and machine learning platform. Jin BT; Xu F; Ng RT; Hogg JC Bioinformatics; 2022 Jan; 38(4):1176-1178. PubMed ID: 34788784 [TBL] [Abstract][Full Text] [Related]
11. RTK: efficient rarefaction analysis of large datasets. Saary P; Forslund K; Bork P; Hildebrand F Bioinformatics; 2017 Aug; 33(16):2594-2595. PubMed ID: 28398468 [TBL] [Abstract][Full Text] [Related]
12. Robust and sparse correlation matrix estimation for the analysis of high-dimensional genomics data. Serra A; Coretto P; Fratello M; Tagliaferri R; Stegle O Bioinformatics; 2018 Feb; 34(4):625-634. PubMed ID: 29040390 [TBL] [Abstract][Full Text] [Related]
14. MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota. Olekhnovich EI; Vasilyev AT; Ulyantsev VI; Kostryukova ES; Tyakht AV Bioinformatics; 2018 Feb; 34(3):434-444. PubMed ID: 29092015 [TBL] [Abstract][Full Text] [Related]
15. Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model. Hosoda S; Fukunaga T; Hamada M Bioinformatics; 2021 Jul; 37(Suppl_1):i16-i24. PubMed ID: 34252954 [TBL] [Abstract][Full Text] [Related]
16. InstaPrism: an R package for fast implementation of BayesPrism. Hu M; Chikina M Bioinformatics; 2024 Jul; ():. PubMed ID: 38970377 [TBL] [Abstract][Full Text] [Related]
17. Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge. Mukherjee S; Zhang Y; Fan J; Seelig G; Kannan S Bioinformatics; 2018 Jul; 34(13):i124-i132. PubMed ID: 29949988 [TBL] [Abstract][Full Text] [Related]