These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

261 related articles for article (PubMed ID: 30169561)

  • 1. FastSpar: rapid and scalable correlation estimation for compositional data.
    Watts SC; Ritchie SC; Inouye M; Holt KE
    Bioinformatics; 2019 Mar; 35(6):1064-1066. PubMed ID: 30169561
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Compositional data network analysis via lasso penalized D-trace loss.
    Yuan H; He S; Deng M
    Bioinformatics; 2019 Sep; 35(18):3404-3411. PubMed ID: 31220226
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CCLasso: correlation inference for compositional data through Lasso.
    Fang H; Huang C; Zhao H; Deng M
    Bioinformatics; 2015 Oct; 31(19):3172-80. PubMed ID: 26048598
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Learning a mixture of microbial networks using minorization-maximization.
    Tavakoli S; Yooseph S
    Bioinformatics; 2019 Jul; 35(14):i23-i30. PubMed ID: 31510709
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Learning sparse log-ratios for high-throughput sequencing data.
    Gordon-Rodriguez E; Quinn TP; Cunningham JP
    Bioinformatics; 2021 Dec; 38(1):157-163. PubMed ID: 34498030
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Direct interaction network inference for compositional data via codaloss.
    Chen L; He S; Zhai Y; Deng M
    J Bioinform Comput Biol; 2020 Dec; 18(6):2050037. PubMed ID: 33106076
    [TBL] [Abstract][Full Text] [Related]  

  • 7. fastCCLasso: a fast and efficient algorithm for estimating correlation matrix from compositional data.
    Zhang S; Fang H; Hu T
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38730540
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A divide-and-conquer method for scalable phylogenetic network inference from multilocus data.
    Zhu J; Liu X; Ogilvie HA; Nakhleh LK
    Bioinformatics; 2019 Jul; 35(14):i370-i378. PubMed ID: 31510688
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Mian: interactive web-based microbiome data table visualization and machine learning platform.
    Jin BT; Xu F; Ng RT; Hogg JC
    Bioinformatics; 2022 Jan; 38(4):1176-1178. PubMed ID: 34788784
    [TBL] [Abstract][Full Text] [Related]  

  • 10. INfORM: Inference of NetwOrk Response Modules.
    Marwah VS; Kinaret PAS; Serra A; Scala G; Lauerma A; Fortino V; Greco D
    Bioinformatics; 2018 Jun; 34(12):2136-2138. PubMed ID: 29425308
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RTK: efficient rarefaction analysis of large datasets.
    Saary P; Forslund K; Bork P; Hildebrand F
    Bioinformatics; 2017 Aug; 33(16):2594-2595. PubMed ID: 28398468
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Robust and sparse correlation matrix estimation for the analysis of high-dimensional genomics data.
    Serra A; Coretto P; Fratello M; Tagliaferri R; Stegle O
    Bioinformatics; 2018 Feb; 34(4):625-634. PubMed ID: 29040390
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PESTO: Parameter EStimation TOolbox.
    Stapor P; Weindl D; Ballnus B; Hug S; Loos C; Fiedler A; Krause S; Hroß S; Fröhlich F; Hasenauer J
    Bioinformatics; 2018 Feb; 34(4):705-707. PubMed ID: 29069312
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota.
    Olekhnovich EI; Vasilyev AT; Ulyantsev VI; Kostryukova ES; Tyakht AV
    Bioinformatics; 2018 Feb; 34(3):434-444. PubMed ID: 29092015
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model.
    Hosoda S; Fukunaga T; Hamada M
    Bioinformatics; 2021 Jul; 37(Suppl_1):i16-i24. PubMed ID: 34252954
    [TBL] [Abstract][Full Text] [Related]  

  • 16. InstaPrism: an R package for fast implementation of BayesPrism.
    Hu M; Chikina M
    Bioinformatics; 2024 Jul; ():. PubMed ID: 38970377
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge.
    Mukherjee S; Zhang Y; Fan J; Seelig G; Kannan S
    Bioinformatics; 2018 Jul; 34(13):i124-i132. PubMed ID: 29949988
    [TBL] [Abstract][Full Text] [Related]  

  • 18. clustermq enables efficient parallelization of genomic analyses.
    Schubert M
    Bioinformatics; 2019 Nov; 35(21):4493-4495. PubMed ID: 31134271
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dynamic interaction network inference from longitudinal microbiome data.
    Lugo-Martinez J; Ruiz-Perez D; Narasimhan G; Bar-Joseph Z
    Microbiome; 2019 Apr; 7(1):54. PubMed ID: 30940197
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices.
    Enache OM; Lahr DL; Natoli TE; Litichevskiy L; Wadden D; Flynn C; Gould J; Asiedu JK; Narayan R; Subramanian A
    Bioinformatics; 2019 Apr; 35(8):1427-1429. PubMed ID: 30203022
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.