These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 30183284)

  • 21. Probing the Binding Pathway of BRACO19 to a Parallel-Stranded Human Telomeric G-Quadruplex Using Molecular Dynamics Binding Simulation with AMBER DNA OL15 and Ligand GAFF2 Force Fields.
    Machireddy B; Kalra G; Jonnalagadda S; Ramanujachary K; Wu C
    J Chem Inf Model; 2017 Nov; 57(11):2846-2864. PubMed ID: 29028340
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Multiscale simulations of human telomeric G-quadruplex DNA.
    Rebič M; Mocci F; Laaksonen A; Uličný J
    J Phys Chem B; 2015 Jan; 119(1):105-13. PubMed ID: 25469629
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Single Stranded Loops of Quadruplex DNA As Key Benchmark for Testing Nucleic Acids Force Fields.
    Fadrná E; Špačková N; Sarzyñska J; Koča J; Orozco M; Cheatham TE; Kulinski T; Šponer J
    J Chem Theory Comput; 2009 Sep; 5(9):2514-30. PubMed ID: 26616629
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Not so crystal clear: the structure of the human telomere G-quadruplex in solution differs from that present in a crystal.
    Li J; Correia JJ; Wang L; Trent JO; Chaires JB
    Nucleic Acids Res; 2005; 33(14):4649-59. PubMed ID: 16106044
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Exploiting hydrogen bonding interactions to probe smaller linear and cyclic diamines binding to G-quadruplexes: a DFT and molecular dynamics study.
    Kanti Si M; Sen A; Ganguly B
    Phys Chem Chem Phys; 2017 May; 19(18):11474-11484. PubMed ID: 28425525
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Molecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations.
    Fadrná E; Spacková N; Stefl R; Koca J; Cheatham TE; Sponer J
    Biophys J; 2004 Jul; 87(1):227-42. PubMed ID: 15240460
    [TBL] [Abstract][Full Text] [Related]  

  • 27. The first crystal structures of hybrid and parallel four-tetrad intramolecular G-quadruplexes.
    Beseiso D; Chen EV; McCarthy SE; Martin KN; Gallagher EP; Miao J; Yatsunyk LA
    Nucleic Acids Res; 2022 Mar; 50(5):2959-2972. PubMed ID: 35212369
    [TBL] [Abstract][Full Text] [Related]  

  • 28. An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN Internal Loops Studied by Molecular Dynamics Methods.
    Réblová K; Střelcová Z; Kulhánek P; Beššeová I; Mathews DH; Van Nostrand K; Yildirim I; Turner DH; Šponer J
    J Chem Theory Comput; 2010 Mar; 6(3):910-29. PubMed ID: 26613316
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Assessing the Current State of Amber Force Field Modifications for DNA.
    Galindo-Murillo R; Robertson JC; Zgarbová M; Šponer J; Otyepka M; Jurečka P; Cheatham TE
    J Chem Theory Comput; 2016 Aug; 12(8):4114-27. PubMed ID: 27300587
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label.
    Zhang X; Xu CX; Di Felice R; Sponer J; Islam B; Stadlbauer P; Ding Y; Mao L; Mao ZW; Qin PZ
    Biochemistry; 2016 Jan; 55(2):360-72. PubMed ID: 26678746
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Experimental demonstration of T:(G:G:G:G):T hexad and T:A:A:T tetrad alignments within a DNA quadruplex stem.
    Webba da Silva M
    Biochemistry; 2005 Mar; 44(10):3754-64. PubMed ID: 15751952
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation.
    Dai J; Punchihewa C; Ambrus A; Chen D; Jones RA; Yang D
    Nucleic Acids Res; 2007; 35(7):2440-50. PubMed ID: 17395643
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A Thermodynamic Study of Adenine and Thymine Substitutions in the Loops of the Oligodeoxyribonucleotide HTel.
    Li YY; Macgregor RB
    J Phys Chem B; 2016 Sep; 120(34):8830-6. PubMed ID: 27487080
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Computational Insights into the Stability and Folding Pathways of Human Telomeric DNA G-Quadruplexes.
    Luo D; Mu Y
    J Phys Chem B; 2016 Jun; 120(22):4912-26. PubMed ID: 27214027
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes.
    Stadlbauer P; Mazzanti L; Cragnolini T; Wales DJ; Derreumaux P; Pasquali S; Šponer J
    J Chem Theory Comput; 2016 Dec; 12(12):6077-6097. PubMed ID: 27767303
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Chain folding and A:T pairing in human telomeric DNA: a model-building and molecular dynamics study.
    Mohanty D; Bansal M
    Biophys J; 1995 Sep; 69(3):1046-67. PubMed ID: 8519959
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T.
    Fu W; Jing H; Xu X; Xu S; Wang T; Hu W; Li H; Zhang N
    Nucleic Acids Res; 2021 Oct; 49(18):10717-10734. PubMed ID: 34500466
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A comparison of four different conformations adopted by human telomeric G-quadruplex using computer simulations.
    Ray A; Panigrahi S; Bhattacharyya D
    Biopolymers; 2016 Feb; 105(2):83-99. PubMed ID: 26448055
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Long-loop G-quadruplexes are misfolded population minorities with fast transition kinetics in human telomeric sequences.
    Koirala D; Ghimire C; Bohrer C; Sannohe Y; Sugiyama H; Mao H
    J Am Chem Soc; 2013 Feb; 135(6):2235-41. PubMed ID: 23327686
    [TBL] [Abstract][Full Text] [Related]  

  • 40. An RNA molecular switch: Intrinsic flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN internal loops studied by molecular dynamics methods.
    Réblová K; Střelcová Z; Kulhánek P; Beššeová I; Mathews DH; Nostrand KV; Yildirim I; Turner DH; Sponer J
    J Chem Theory Comput; 2010 Jan; 2010(6):910-929. PubMed ID: 21132104
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.