197 related articles for article (PubMed ID: 30190538)
41. A tale of two sequences: microRNA-target chimeric reads.
Broughton JP; Pasquinelli AE
Genet Sel Evol; 2016 Apr; 48():31. PubMed ID: 27044644
[TBL] [Abstract][Full Text] [Related]
42. A Pipeline for PAR-CLIP Data Analysis.
Jens M
Methods Mol Biol; 2016; 1358():197-207. PubMed ID: 26463385
[TBL] [Abstract][Full Text] [Related]
43. Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).
Van Nostrand EL; Nguyen TB; Gelboin-Burkhart C; Wang R; Blue SM; Pratt GA; Louie AL; Yeo GW
Methods Mol Biol; 2017; 1648():177-200. PubMed ID: 28766298
[TBL] [Abstract][Full Text] [Related]
44. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.
Moore MJ; Zhang C; Gantman EC; Mele A; Darnell JC; Darnell RB
Nat Protoc; 2014 Feb; 9(2):263-93. PubMed ID: 24407355
[TBL] [Abstract][Full Text] [Related]
45. MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome.
Wang Y; Soneson C; Malinowska AL; Laski A; Ghosh S; Kanitz A; Gebert LFR; Robinson MD; Hall J
Nucleic Acids Res; 2021 Jan; 49(1):25-37. PubMed ID: 33300035
[TBL] [Abstract][Full Text] [Related]
46. Identifying miRNA Targets Using AGO-RIPseq.
Petri R; Jakobsson J
Methods Mol Biol; 2018; 1720():131-140. PubMed ID: 29236255
[TBL] [Abstract][Full Text] [Related]
47. PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis.
Chen B; Yun J; Kim MS; Mendell JT; Xie Y
Genome Biol; 2014 Jan; 15(1):R18. PubMed ID: 24451213
[TBL] [Abstract][Full Text] [Related]
48. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.
Freeberg MA; Kim JK
Methods Mol Biol; 2016; 1361():91-104. PubMed ID: 26483018
[TBL] [Abstract][Full Text] [Related]
49. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
Li L; Förstner KU; Chao Y
Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
[TBL] [Abstract][Full Text] [Related]
50. Elucidation of transcriptome-wide microRNA binding sites in human cardiac tissues by Ago2 HITS-CLIP.
Spengler RM; Zhang X; Cheng C; McLendon JM; Skeie JM; Johnson FL; Davidson BL; Boudreau RL
Nucleic Acids Res; 2016 Sep; 44(15):7120-31. PubMed ID: 27418678
[TBL] [Abstract][Full Text] [Related]
51. Identification and characterization of microRNAs expressed in human breast cancer chemo-resistant MCF-7/Adr cells by Solexa deep-sequencing technology.
Xu P; Wang L; Huang L; Li W; Lv S; Lv M; Ma J; Zhou Q; Wu X; Fu Z; Lu C; Yin H
Biomed Pharmacother; 2015 Oct; 75():173-8. PubMed ID: 26293775
[TBL] [Abstract][Full Text] [Related]
52. Transcriptome-wide identification of RNA binding sites by CLIP-seq.
Murigneux V; Saulière J; Roest Crollius H; Le Hir H
Methods; 2013 Sep; 63(1):32-40. PubMed ID: 23545196
[TBL] [Abstract][Full Text] [Related]
53. Genome-wide identification of miRNA targets by PAR-CLIP.
Hafner M; Lianoglou S; Tuschl T; Betel D
Methods; 2012 Oct; 58(2):94-105. PubMed ID: 22926237
[TBL] [Abstract][Full Text] [Related]
54. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
[TBL] [Abstract][Full Text] [Related]
55. Improving miRNA Target Prediction Using CLASH Data.
Li X; Hu H
Methods Mol Biol; 2019; 1970():75-83. PubMed ID: 30963489
[TBL] [Abstract][Full Text] [Related]
56. Proximity-CLIP and Expedited Non-Radioactive Library Preparation of Small RNA Footprints for Next-Generation Sequencing.
Anastasakis D; Benhalevy D; Hafner M
Curr Protoc Mol Biol; 2020 Jun; 131(1):e120. PubMed ID: 32438484
[TBL] [Abstract][Full Text] [Related]
57. Expanding the map of protein-RNA interaction sites via cell fusion followed by PAR-CLIP.
Hinze F; Drewe-Boss P; Milek M; Ohler U; Landthaler M; Gotthardt M
RNA Biol; 2018 Mar; 15(3):359-368. PubMed ID: 29028411
[TBL] [Abstract][Full Text] [Related]
58. Computational and Experimental Identification of Tissue-Specific MicroRNA Targets.
Amirkhah R; Meshkin HN; Farazmand A; Rasko JEJ; Schmitz U
Methods Mol Biol; 2017; 1580():127-147. PubMed ID: 28439832
[TBL] [Abstract][Full Text] [Related]
59. Argonaute high-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation reveals a snapshot of miRNA gene regulation in the mammalian retina.
Sundermeier TR; Jin H; Kleinjan ML; Mustafi D; Licatalosi DD; Palczewski K
Biochemistry; 2014 Sep; 53(37):5831-3. PubMed ID: 25204418
[TBL] [Abstract][Full Text] [Related]
60. Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP.
Yun J; Wang T; Xiao G
Biometrics; 2014 Jun; 70(2):430-40. PubMed ID: 24571656
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]