These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

310 related articles for article (PubMed ID: 30199638)

  • 21. 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein.
    Shajani Z; Varani G
    J Mol Biol; 2005 Jun; 349(4):699-715. PubMed ID: 15890361
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Molecular dynamics simulations of the complex between human U1A protein and hairpin II of U1 small nuclear RNA and of free RNA in solution.
    Tang Y; Nilsson L
    Biophys J; 1999 Sep; 77(3):1284-305. PubMed ID: 10465742
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Machine Learning in QM/MM Molecular Dynamics Simulations of Condensed-Phase Systems.
    Böselt L; Thürlemann M; Riniker S
    J Chem Theory Comput; 2021 May; 17(5):2641-2658. PubMed ID: 33818085
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies.
    Shajani Z; Drobny G; Varani G
    Biochemistry; 2007 May; 46(20):5875-83. PubMed ID: 17469848
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Induced fit or conformational selection for RNA/U1A folding.
    Qin F; Chen Y; Wu M; Li Y; Zhang J; Chen HF
    RNA; 2010 May; 16(5):1053-61. PubMed ID: 20354153
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Structural basis of the RNA-binding specificity of human U1A protein.
    Allain FH; Howe PW; Neuhaus D; Varani G
    EMBO J; 1997 Sep; 16(18):5764-72. PubMed ID: 9312034
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Structures in solutions from joint experimental-computational analysis: applications to cyclic molecules and studies of noncovalent interactions.
    Aliev AE; Mia ZA; Khaneja HS; King FD
    J Phys Chem A; 2012 Jan; 116(3):1093-109. PubMed ID: 22204632
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Quantum effects in cation interactions with first and second coordination shell ligands in metalloproteins.
    Ngo V; da Silva MC; Kubillus M; Li H; Roux B; Elstner M; Cui Q; Salahub DR; Noskov SY
    J Chem Theory Comput; 2015 Oct; 11(10):4992-5001. PubMed ID: 26574284
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Changes in side-chain and backbone dynamics identify determinants of specificity in RNA recognition by human U1A protein.
    Mittermaier A; Varani L; Muhandiram DR; Kay LE; Varani G
    J Mol Biol; 1999 Dec; 294(4):967-79. PubMed ID: 10588900
    [TBL] [Abstract][Full Text] [Related]  

  • 30. On the effect of a variation of the force field, spatial boundary condition and size of the QM region in QM/MM MD simulations.
    Meier K; Thiel W; van Gunsteren WF
    J Comput Chem; 2012 Feb; 33(4):363-78. PubMed ID: 22180225
    [TBL] [Abstract][Full Text] [Related]  

  • 31. U1A protein-stem loop 2 RNA recognition: prediction of structural differences from protein mutations.
    Kormos BL; Pieniazek SN; Beveridge DL; Baranger AM
    Biopolymers; 2011 Sep; 95(9):591-606. PubMed ID: 21384338
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Do collective atomic fluctuations account for cooperative effects? Molecular dynamics studies of the U1A-RNA complex.
    Kormos BL; Baranger AM; Beveridge DL
    J Am Chem Soc; 2006 Jul; 128(28):8992-3. PubMed ID: 16834346
    [TBL] [Abstract][Full Text] [Related]  

  • 33. The adaptive buffered force QM/MM method in the CP2K and AMBER software packages.
    Mones L; Jones A; Götz AW; Laino T; Walker RC; Leimkuhler B; Csányi G; Bernstein N
    J Comput Chem; 2015 Apr; 36(9):633-48. PubMed ID: 25649827
    [TBL] [Abstract][Full Text] [Related]  

  • 34. QM/MM Calculations on Proteins.
    Ryde U
    Methods Enzymol; 2016; 577():119-58. PubMed ID: 27498637
    [TBL] [Abstract][Full Text] [Related]  

  • 35. QM/MM calculation of solvent effects on absorption spectra of guanine.
    Parac M; Doerr M; Marian CM; Thiel W
    J Comput Chem; 2010 Jan; 31(1):90-106. PubMed ID: 19412906
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Fragment quantum mechanical calculation of proteins and its applications.
    He X; Zhu T; Wang X; Liu J; Zhang JZ
    Acc Chem Res; 2014 Sep; 47(9):2748-57. PubMed ID: 24851673
    [TBL] [Abstract][Full Text] [Related]  

  • 37. PUPIL: A Software Integration System for Multi-Scale QM/MM-MD Simulations and Its Application to Biomolecular Systems.
    Torras J; Roberts BP; Seabra GM; Trickey SB
    Adv Protein Chem Struct Biol; 2015; 100():1-31. PubMed ID: 26415839
    [TBL] [Abstract][Full Text] [Related]  

  • 38. pKa calculations in solution and proteins with QM/MM free energy perturbation simulations: a quantitative test of QM/MM protocols.
    Riccardi D; Schaefer P; Cui Q
    J Phys Chem B; 2005 Sep; 109(37):17715-33. PubMed ID: 16853267
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Solvent effects on the properties of hyperbranched polythiophenes.
    Torras J; Zanuy D; Aradilla D; Alemán C
    Phys Chem Chem Phys; 2016 Sep; 18(35):24610-9. PubMed ID: 27541726
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State.
    Ghaemi Z; Guzman I; Baek JU; Gruebele M; Luthey-Schulten Z
    J Chem Theory Comput; 2016 Sep; 12(9):4593-9. PubMed ID: 27529183
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 16.