125 related articles for article (PubMed ID: 30202930)
1. Filtering and inference for stochastic oscillators with distributed delays.
Calderazzo S; Brancaccio M; Finkenstädt B
Bioinformatics; 2019 Apr; 35(8):1380-1387. PubMed ID: 30202930
[TBL] [Abstract][Full Text] [Related]
2. Bayesian inference of distributed time delay in transcriptional and translational regulation.
Choi B; Cheng YY; Cinar S; Ott W; Bennett MR; Josić K; Kim JK
Bioinformatics; 2020 Jan; 36(2):586-593. PubMed ID: 31347688
[TBL] [Abstract][Full Text] [Related]
3. Long-time analytic approximation of large stochastic oscillators: Simulation, analysis and inference.
Minas G; Rand DA
PLoS Comput Biol; 2017 Jul; 13(7):e1005676. PubMed ID: 28742083
[TBL] [Abstract][Full Text] [Related]
4. Inference for reaction networks using the linear noise approximation.
Fearnhead P; Giagos V; Sherlock C
Biometrics; 2014 Jun; 70(2):457-66. PubMed ID: 24467590
[TBL] [Abstract][Full Text] [Related]
5. Bayesian inference on stochastic gene transcription from flow cytometry data.
Tiberi S; Walsh M; Cavallaro M; Hebenstreit D; Finkenstädt B
Bioinformatics; 2018 Sep; 34(17):i647-i655. PubMed ID: 30423089
[TBL] [Abstract][Full Text] [Related]
6. Deterministic characterization of phase noise in biomolecular oscillators.
Koeppl H; Hafner M; Ganguly A; Mehrotra A
Phys Biol; 2011 Oct; 8(5):055008. PubMed ID: 21832803
[TBL] [Abstract][Full Text] [Related]
7. RSSALib: a library for stochastic simulation of complex biochemical reactions.
Thanh VH
Bioinformatics; 2020 Sep; 36(18):4825-4826. PubMed ID: 32614393
[TBL] [Abstract][Full Text] [Related]
8. MEANS: python package for Moment Expansion Approximation, iNference and Simulation.
Fan S; Geissmann Q; Lakatos E; Lukauskas S; Ale A; Babtie AC; Kirk PD; Stumpf MP
Bioinformatics; 2016 Sep; 32(18):2863-5. PubMed ID: 27153663
[TBL] [Abstract][Full Text] [Related]
9. Hierarchical Bayesian models of transcriptional and translational regulation processes with delays.
Cortez MJ; Hong H; Choi B; Kim JK; Josić K
Bioinformatics; 2021 Dec; 38(1):187-195. PubMed ID: 34450624
[TBL] [Abstract][Full Text] [Related]
10. Estimating chain length for time delays in dynamical systems using profile likelihood.
Hauber AL; Engesser R; Vanlier J; Timmer J
Bioinformatics; 2020 Mar; 36(6):1848-1854. PubMed ID: 32176768
[TBL] [Abstract][Full Text] [Related]
11. Optimal entrainment of circadian clocks in the presence of noise.
Monti M; Lubensky DK; Ten Wolde PR
Phys Rev E; 2018 Mar; 97(3-1):032405. PubMed ID: 29776095
[TBL] [Abstract][Full Text] [Related]
12. Inferring causality in biological oscillators.
Tyler J; Forger D; Kim JK
Bioinformatics; 2021 Dec; 38(1):196-203. PubMed ID: 34463706
[TBL] [Abstract][Full Text] [Related]
13. Scalable machine learning-assisted model exploration and inference using Sciope.
Singh P; Wrede F; Hellander A
Bioinformatics; 2021 Apr; 37(2):279-281. PubMed ID: 32706854
[TBL] [Abstract][Full Text] [Related]
14. Functional network inference of the suprachiasmatic nucleus.
Abel JH; Meeker K; Granados-Fuentes D; St John PC; Wang TJ; Bales BB; Doyle FJ; Herzog ED; Petzold LR
Proc Natl Acad Sci U S A; 2016 Apr; 113(16):4512-7. PubMed ID: 27044085
[TBL] [Abstract][Full Text] [Related]
15. The signal within the noise: efficient inference of stochastic gene regulation models using fluorescence histograms and stochastic simulations.
Lillacci G; Khammash M
Bioinformatics; 2013 Sep; 29(18):2311-9. PubMed ID: 23821649
[TBL] [Abstract][Full Text] [Related]
16. Quantitative performance metrics for robustness in circadian rhythms.
Bagheri N; Stelling J; Doyle FJ
Bioinformatics; 2007 Feb; 23(3):358-64. PubMed ID: 17158515
[TBL] [Abstract][Full Text] [Related]
17. StochDecomp--Matlab package for noise decomposition in stochastic biochemical systems.
Jetka T; Charzyńska A; Gambin A; Stumpf MP; Komorowski M
Bioinformatics; 2014 Jan; 30(1):137-8. PubMed ID: 24191070
[TBL] [Abstract][Full Text] [Related]
18. The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework.
Patel VR; Ceglia N; Zeller M; Eckel-Mahan K; Sassone-Corsi P; Baldi P
Bioinformatics; 2015 Oct; 31(19):3181-8. PubMed ID: 26049162
[TBL] [Abstract][Full Text] [Related]
19. Global synchronization for discrete-time stochastic complex networks with randomly occurred nonlinearities and mixed time delays.
Wang Z; Wang Y; Liu Y
IEEE Trans Neural Netw; 2010 Jan; 21(1):11-25. PubMed ID: 19955035
[TBL] [Abstract][Full Text] [Related]
20. STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.
Klingbeil G; Erban R; Giles M; Maini PK
Bioinformatics; 2011 Apr; 27(8):1170-1. PubMed ID: 21357575
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]