These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

519 related articles for article (PubMed ID: 30204435)

  • 1. Generating Intrinsically Disordered Protein Conformational Ensembles from a Database of Ramachandran Space Pair Residue Probabilities Using a Markov Chain.
    Cukier RI
    J Phys Chem B; 2018 Oct; 122(39):9087-9101. PubMed ID: 30204435
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular Dynamics Simulations Combined with Nuclear Magnetic Resonance and/or Small-Angle X-ray Scattering Data for Characterizing Intrinsically Disordered Protein Conformational Ensembles.
    Chan-Yao-Chong M; Durand D; Ha-Duong T
    J Chem Inf Model; 2019 May; 59(5):1743-1758. PubMed ID: 30840442
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Generating intrinsically disordered protein conformational ensembles from a Markov chain.
    Cukier RI
    J Chem Phys; 2018 Mar; 148(10):105102. PubMed ID: 29544285
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Intrinsically disordered protein-specific force field CHARMM36IDPSFF.
    Liu H; Song D; Lu H; Luo R; Chen HF
    Chem Biol Drug Des; 2018 Oct; 92(4):1722-1735. PubMed ID: 29808548
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improved validation of IDP ensembles by one-bond Cα-Hα scalar couplings.
    Gapsys V; Narayanan RL; Xiang S; de Groot BL; Zweckstetter M
    J Biomol NMR; 2015 Nov; 63(3):299-307. PubMed ID: 26433382
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural Ensembles of Intrinsically Disordered Proteins Depend Strongly on Force Field: A Comparison to Experiment.
    Rauscher S; Gapsys V; Gajda MJ; Zweckstetter M; de Groot BL; Grubmüller H
    J Chem Theory Comput; 2015 Nov; 11(11):5513-24. PubMed ID: 26574339
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A J-modulated protonless NMR experiment characterizes the conformational ensemble of the intrinsically disordered protein WIP.
    Rozentur-Shkop E; Goobes G; Chill JH
    J Biomol NMR; 2016 Dec; 66(4):243-257. PubMed ID: 27844185
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Full structural ensembles of intrinsically disordered proteins from unbiased molecular dynamics simulations.
    Shrestha UR; Smith JC; Petridis L
    Commun Biol; 2021 Feb; 4(1):243. PubMed ID: 33623120
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins.
    Rahman MU; Rehman AU; Liu H; Chen HF
    J Chem Inf Model; 2020 Oct; 60(10):4912-4923. PubMed ID: 32816485
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins.
    Yang S; Liu H; Zhang Y; Lu H; Chen H
    J Chem Inf Model; 2019 Nov; 59(11):4793-4805. PubMed ID: 31613621
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformational Ensembles of an Intrinsically Disordered Protein Consistent with NMR, SAXS, and Single-Molecule FRET.
    Gomes GW; Krzeminski M; Namini A; Martin EW; Mittag T; Head-Gordon T; Forman-Kay JD; Gradinaru CC
    J Am Chem Soc; 2020 Sep; 142(37):15697-15710. PubMed ID: 32840111
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Hierarchical Ensembles of Intrinsically Disordered Proteins at Atomic Resolution in Molecular Dynamics Simulations.
    Pietrek LM; Stelzl LS; Hummer G
    J Chem Theory Comput; 2020 Jan; 16(1):725-737. PubMed ID: 31809054
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of structure determination methods for intrinsically disordered amyloid-β peptides.
    Ball KA; Wemmer DE; Head-Gordon T
    J Phys Chem B; 2014 Jun; 118(24):6405-16. PubMed ID: 24410358
    [TBL] [Abstract][Full Text] [Related]  

  • 14. WASCO: A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins.
    González-Delgado J; Sagar A; Zanon C; Lindorff-Larsen K; Bernadó P; Neuvial P; Cortés J
    J Mol Biol; 2023 Jul; 435(14):168053. PubMed ID: 36934808
    [TBL] [Abstract][Full Text] [Related]  

  • 15. New force field on modeling intrinsically disordered proteins.
    Wang W; Ye W; Jiang C; Luo R; Chen HF
    Chem Biol Drug Des; 2014 Sep; 84(3):253-69. PubMed ID: 24589355
    [TBL] [Abstract][Full Text] [Related]  

  • 16. pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.
    Varadi M; Kosol S; Lebrun P; Valentini E; Blackledge M; Dunker AK; Felli IC; Forman-Kay JD; Kriwacki RW; Pierattelli R; Sussman J; Svergun DI; Uversky VN; Vendruscolo M; Wishart D; Wright PE; Tompa P
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D326-35. PubMed ID: 24174539
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Artificial intelligence guided conformational mining of intrinsically disordered proteins.
    Gupta A; Dey S; Hicks A; Zhou HX
    Commun Biol; 2022 Jun; 5(1):610. PubMed ID: 35725761
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The combined force field-sampling problem in simulations of disordered amyloid-β peptides.
    Lincoff J; Sasmal S; Head-Gordon T
    J Chem Phys; 2019 Mar; 150(10):104108. PubMed ID: 30876367
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Structural Characterization of N-WASP Domain V Using MD Simulations with NMR and SAXS Data.
    Chan-Yao-Chong M; Deville C; Pinet L; van Heijenoort C; Durand D; Ha-Duong T
    Biophys J; 2019 Apr; 116(7):1216-1227. PubMed ID: 30878202
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Streamlining NMR Chemical Shift Predictions for Intrinsically Disordered Proteins: Design of Ensembles with Dimensionality Reduction and Clustering.
    Bakker MJ; Gaffour A; Juhás M; Zapletal V; Stošek J; Bratholm LA; Pavlíková Přecechtělová J
    J Chem Inf Model; 2024 Aug; 64(16):6542-6556. PubMed ID: 39099394
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 26.