227 related articles for article (PubMed ID: 30224349)
1. A sequence-based, deep learning model accurately predicts RNA splicing branchpoints.
Paggi JM; Bejerano G
RNA; 2018 Dec; 24(12):1647-1658. PubMed ID: 30224349
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide discovery of human splicing branchpoints.
Mercer TR; Clark MB; Andersen SB; Brunck ME; Haerty W; Crawford J; Taft RJ; Nielsen LK; Dinger ME; Mattick JS
Genome Res; 2015 Feb; 25(2):290-303. PubMed ID: 25561518
[TBL] [Abstract][Full Text] [Related]
3. Most human introns are recognized via multiple and tissue-specific branchpoints.
Pineda JMB; Bradley RK
Genes Dev; 2018 Apr; 32(7-8):577-591. PubMed ID: 29666160
[TBL] [Abstract][Full Text] [Related]
4. Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods.
Zhang W; Zhu X; Fu Y; Tsuji J; Weng Z
BMC Bioinformatics; 2017 Dec; 18(Suppl 13):464. PubMed ID: 29219070
[TBL] [Abstract][Full Text] [Related]
5. Machine learning annotation of human branchpoints.
Signal B; Gloss BS; Dinger ME; Mercer TR
Bioinformatics; 2018 Mar; 34(6):920-927. PubMed ID: 29092009
[TBL] [Abstract][Full Text] [Related]
6. Predicting Splicing from Primary Sequence with Deep Learning.
Jaganathan K; Kyriazopoulou Panagiotopoulou S; McRae JF; Darbandi SF; Knowles D; Li YI; Kosmicki JA; Arbelaez J; Cui W; Schwartz GB; Chow ED; Kanterakis E; Gao H; Kia A; Batzoglou S; Sanders SJ; Farh KK
Cell; 2019 Jan; 176(3):535-548.e24. PubMed ID: 30661751
[TBL] [Abstract][Full Text] [Related]
7. Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions.
Thanaraj TA; Clark F
Nucleic Acids Res; 2001 Jun; 29(12):2581-93. PubMed ID: 11410667
[TBL] [Abstract][Full Text] [Related]
8. Computational analysis of splicing errors and mutations in human transcripts.
Kurmangaliyev YZ; Gelfand MS
BMC Genomics; 2008 Jan; 9():13. PubMed ID: 18194514
[TBL] [Abstract][Full Text] [Related]
9. Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon.
Simpson CG; Thow G; Clark GP; Jennings SN; Watters JA; Brown JW
RNA; 2002 Jan; 8(1):47-56. PubMed ID: 11873758
[TBL] [Abstract][Full Text] [Related]
10. CADD-Splice-improving genome-wide variant effect prediction using deep learning-derived splice scores.
Rentzsch P; Schubach M; Shendure J; Kircher M
Genome Med; 2021 Feb; 13(1):31. PubMed ID: 33618777
[TBL] [Abstract][Full Text] [Related]
11. Cancer-associated SF3B1 mutations affect alternative splicing by promoting alternative branchpoint usage.
Alsafadi S; Houy A; Battistella A; Popova T; Wassef M; Henry E; Tirode F; Constantinou A; Piperno-Neumann S; Roman-Roman S; Dutertre M; Stern MH
Nat Commun; 2016 Feb; 7():10615. PubMed ID: 26842708
[TBL] [Abstract][Full Text] [Related]
12. RS domain-splicing signal interactions in splicing of U12-type and U2-type introns.
Shen H; Green MR
Nat Struct Mol Biol; 2007 Jul; 14(7):597-603. PubMed ID: 17603499
[TBL] [Abstract][Full Text] [Related]
13. Splicing of constitutive upstream introns is essential for the recognition of intra-exonic suboptimal splice sites in the thrombopoietin gene.
Romano M; Marcucci R; Baralle FE
Nucleic Acids Res; 2001 Feb; 29(4):886-94. PubMed ID: 11160920
[TBL] [Abstract][Full Text] [Related]
14. The low information content of Neurospora splicing signals: implications for RNA splicing and intron origin.
Collins RA; Stajich JE; Field DJ; Olive JE; DeAbreu DM
RNA; 2015 May; 21(5):997-1004. PubMed ID: 25805857
[TBL] [Abstract][Full Text] [Related]
15. Deep RNA sequencing reveals a high frequency of alternative splicing events in the fungus Trichoderma longibrachiatum.
Xie BB; Li D; Shi WL; Qin QL; Wang XW; Rong JC; Sun CY; Huang F; Zhang XY; Dong XW; Chen XL; Zhou BC; Zhang YZ; Song XY
BMC Genomics; 2015 Feb; 16(1):54. PubMed ID: 25652134
[TBL] [Abstract][Full Text] [Related]
16. Intronic PAH gene mutations cause a splicing defect by a novel mechanism involving U1snRNP binding downstream of the 5' splice site.
Martínez-Pizarro A; Dembic M; Pérez B; Andresen BS; Desviat LR
PLoS Genet; 2018 Apr; 14(4):e1007360. PubMed ID: 29684050
[TBL] [Abstract][Full Text] [Related]
17. Pseudoexon activation in disease by non-splice site deep intronic sequence variation - wild type pseudoexons constitute high-risk sites in the human genome.
Petersen USS; Doktor TK; Andresen BS
Hum Mutat; 2022 Feb; 43(2):103-127. PubMed ID: 34837434
[TBL] [Abstract][Full Text] [Related]
18. An intronic splicing enhancer binds U1 snRNPs to enhance splicing and select 5' splice sites.
McCullough AJ; Berget SM
Mol Cell Biol; 2000 Dec; 20(24):9225-35. PubMed ID: 11094074
[TBL] [Abstract][Full Text] [Related]
19. Identification of functional single nucleotide polymorphisms in the branchpoint site.
Chiang HL; Wu JY; Chen YT
Hum Genomics; 2017 Nov; 11(1):27. PubMed ID: 29121990
[TBL] [Abstract][Full Text] [Related]
20. Intrasplicing coordinates alternative first exons with alternative splicing in the protein 4.1R gene.
Parra MK; Tan JS; Mohandas N; Conboy JG
EMBO J; 2008 Jan; 27(1):122-31. PubMed ID: 18079699
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
