149 related articles for article (PubMed ID: 30230122)
1. Relationship between call rate per individual and genotyping accuracy of bovine single-nucleotide polymorphism array using deoxyribonucleic acid of various qualities.
Sasaki S; Yoshinari K; Uchiyama K; Takeda M; Kojima T
Anim Sci J; 2018 Nov; 89(11):1533-1539. PubMed ID: 30230122
[TBL] [Abstract][Full Text] [Related]
2. [Impacts of SNP genotyping call rate and SNP genotyping error rate on imputation accuracy inHolsteincattle].
Li Z; He J; Jiang J; G Tait R; Bauck S; Guo W; Wu XL
Yi Chuan; 2019 Jul; 41(7):644-652. PubMed ID: 31307973
[TBL] [Abstract][Full Text] [Related]
3. Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys.
Rincon G; Weber KL; Eenennaam AL; Golden BL; Medrano JF
J Dairy Sci; 2011 Dec; 94(12):6116-21. PubMed ID: 22118099
[TBL] [Abstract][Full Text] [Related]
4. Short communication: relationship of call rate and accuracy of single nucleotide polymorphism genotypes in dairy cattle.
Cooper TA; Wiggans GR; VanRaden PM
J Dairy Sci; 2013 May; 96(5):3336-9. PubMed ID: 23497995
[TBL] [Abstract][Full Text] [Related]
5. Justification for setting the individual animal genotype call rate threshold at eighty-five percent.
Purfield DC; McClure M; Berry DP
J Anim Sci; 2016 Nov; 94(11):4558-4569. PubMed ID: 27898963
[TBL] [Abstract][Full Text] [Related]
6. High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies.
Magee DA; Berkowicz EW; Sikora KM; Sweeney T; Kenny DA; Kelly AK; Evans RD; Wickham BW; Bradley DG; Spillane C; MacHugh DE
Anim Biotechnol; 2010 Oct; 21(4):257-62. PubMed ID: 20967645
[TBL] [Abstract][Full Text] [Related]
7. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
[TBL] [Abstract][Full Text] [Related]
8. Physiology and Endocrinology Symposium: How single nucleotide polymorphism chips will advance our knowledge of factors controlling puberty and aid in selecting replacement beef females.
Snelling WM; Cushman RA; Fortes MR; Reverter A; Bennett GL; Keele JW; Kuehn LA; McDaneld TG; Thallman RM; Thomas MG
J Anim Sci; 2012 Apr; 90(4):1152-65. PubMed ID: 22038989
[TBL] [Abstract][Full Text] [Related]
9. Ultra-low-density genotype panels for breed assignment of Angus and Hereford cattle.
Judge MM; Kelleher MM; Kearney JF; Sleator RD; Berry DP
Animal; 2017 Jun; 11(6):938-947. PubMed ID: 27881206
[TBL] [Abstract][Full Text] [Related]
10. Imputation of genotypes with low-density chips and its effect on reliability of direct genomic values in Dutch Holstein cattle.
Mulder HA; Calus MP; Druet T; Schrooten C
J Dairy Sci; 2012 Feb; 95(2):876-89. PubMed ID: 22281352
[TBL] [Abstract][Full Text] [Related]
11. Genotypes and allele frequencies of buried SNPs in a bovine single-nucleotide polymorphism array in Japanese Black cattle.
Sasaki S; Muraki E; Inoue Y; Suezawa R; Nikadori H; Yoshida Y; Nariai S; Hideshima R; Moriwaki S; Nakashima R; Uchiyama K; Yoshinari K; Takeda M; Kojima T
Anim Sci J; 2019 Dec; 90(12):1503-1509. PubMed ID: 31599477
[TBL] [Abstract][Full Text] [Related]
12. Allele frequency calibration for SNP based genotyping of DNA pools: A regression based local-global error fusion method.
Rahman A; Hellicar A; Smith D; Henshall JM
Comput Biol Med; 2015 Jun; 61():48-55. PubMed ID: 25863000
[TBL] [Abstract][Full Text] [Related]
13. The effect of input DNA copy number on genotype call and characterising SNP markers in the humpback whale genome using a nanofluidic array.
Bhat S; Polanowski AM; Double MC; Jarman SN; Emslie KR
PLoS One; 2012; 7(6):e39181. PubMed ID: 22745712
[TBL] [Abstract][Full Text] [Related]
14. Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels.
Erbe M; Hayes BJ; Matukumalli LK; Goswami S; Bowman PJ; Reich CM; Mason BA; Goddard ME
J Dairy Sci; 2012 Jul; 95(7):4114-29. PubMed ID: 22720968
[TBL] [Abstract][Full Text] [Related]
15. Linkage disequilibrium among commonly genotyped SNP variants detected from bull sequence
Snelling WM; Kuehn LA; Keel BN; Thallman RM; Bennett GL
Anim Genet; 2017 Oct; 48(5):516-522. PubMed ID: 28737288
[TBL] [Abstract][Full Text] [Related]
16. Construction of a versatile SNP array for pyramiding useful genes of rice.
Kurokawa Y; Noda T; Yamagata Y; Angeles-Shim R; Sunohara H; Uehara K; Furuta T; Nagai K; Jena KK; Yasui H; Yoshimura A; Ashikari M; Doi K
Plant Sci; 2016 Jan; 242():131-139. PubMed ID: 26566831
[TBL] [Abstract][Full Text] [Related]
17. Joint imputation of whole-genome sequence variants and large chromosomal deletions in cattle.
Mesbah-Uddin M; Guldbrandtsen B; Lund MS; Boichard D; Sahana G
J Dairy Sci; 2019 Dec; 102(12):11193-11206. PubMed ID: 31606212
[TBL] [Abstract][Full Text] [Related]
18. Accuracy of imputation of single nucleotide polymorphism marker genotypes from low-density panels in Japanese Black cattle.
Ogawa S; Matsuda H; Taniguchi Y; Watanabe T; Takasuga A; Sugimoto Y; Iwaisaki H
Anim Sci J; 2016 Jan; 87(1):3-12. PubMed ID: 26032028
[TBL] [Abstract][Full Text] [Related]
19. Comparison of genotyping using pooled DNA samples (allelotyping) and individual genotyping using the affymetrix genome-wide human SNP array 6.0.
Teumer A; Ernst FD; Wiechert A; Uhr K; Nauck M; Petersmann A; Völzke H; Völker U; Homuth G
BMC Genomics; 2013 Jul; 14():506. PubMed ID: 23885805
[TBL] [Abstract][Full Text] [Related]
20. SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification.
McClure MC; McCarthy J; Flynn P; McClure JC; Dair E; O'Connell DK; Kearney JF
Front Genet; 2018; 9():84. PubMed ID: 29599798
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
