434 related articles for article (PubMed ID: 30255803)
21. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
[TBL] [Abstract][Full Text] [Related]
22. RVboost: RNA-seq variants prioritization using a boosting method.
Wang C; Davila JI; Baheti S; Bhagwate AV; Wang X; Kocher JP; Slager SL; Feldman AL; Novak AJ; Cerhan JR; Thompson EA; Asmann YW
Bioinformatics; 2014 Dec; 30(23):3414-6. PubMed ID: 25170027
[TBL] [Abstract][Full Text] [Related]
23. Fully automated pipeline for detection of sex linked genes using RNA-Seq data.
Michalovova M; Kubat Z; Hobza R; Vyskot B; Kejnovsky E
BMC Bioinformatics; 2015 Mar; 16(1):78. PubMed ID: 25884927
[TBL] [Abstract][Full Text] [Related]
24. Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data.
Wang N; Lysenkov V; Orte K; Kairisto V; Aakko J; Khan S; Elo LL
PLoS Comput Biol; 2022 Feb; 18(2):e1009269. PubMed ID: 35176018
[TBL] [Abstract][Full Text] [Related]
25. IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples.
Hintzsche J; Kim J; Yadav V; Amato C; Robinson SE; Seelenfreund E; Shellman Y; Wisell J; Applegate A; McCarter M; Box N; Tentler J; De S; Robinson WA; Tan AC
J Am Med Inform Assoc; 2016 Jul; 23(4):721-30. PubMed ID: 27026619
[TBL] [Abstract][Full Text] [Related]
26. The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data.
Tang X; Baheti S; Shameer K; Thompson KJ; Wills Q; Niu N; Holcomb IN; Boutet SC; Ramakrishnan R; Kachergus JM; Kocher JP; Weinshilboum RM; Wang L; Thompson EA; Kalari KR
Nucleic Acids Res; 2014 Dec; 42(22):e172. PubMed ID: 25352556
[TBL] [Abstract][Full Text] [Related]
27. Amplicon Indel Hunter Is a Novel Bioinformatics Tool to Detect Large Somatic Insertion/Deletion Mutations in Amplicon-Based Next-Generation Sequencing Data.
Kadri S; Zhen CJ; Wurst MN; Long BC; Jiang ZF; Wang YL; Furtado LV; Segal JP
J Mol Diagn; 2015 Nov; 17(6):635-43. PubMed ID: 26319364
[TBL] [Abstract][Full Text] [Related]
28. VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
Cornwell M; Vangala M; Taing L; Herbert Z; Köster J; Li B; Sun H; Li T; Zhang J; Qiu X; Pun M; Jeselsohn R; Brown M; Liu XS; Long HW
BMC Bioinformatics; 2018 Apr; 19(1):135. PubMed ID: 29649993
[TBL] [Abstract][Full Text] [Related]
29. Indel detection from DNA and RNA sequencing data with transIndel.
Yang R; Van Etten JL; Dehm SM
BMC Genomics; 2018 Apr; 19(1):270. PubMed ID: 29673323
[TBL] [Abstract][Full Text] [Related]
30. Targeted next-generation-sequencing for reliable detection of targetable rearrangements in lung adenocarcinoma-a single center retrospective study.
Velizheva NP; Rechsteiner MP; Valtcheva N; Freiberger SN; Wong CE; Vrugt B; Zhong Q; Wagner U; Moch H; Hillinger S; Schmitt-Opitz I; Soltermann A; Wild PJ; Tischler V
Pathol Res Pract; 2018 Apr; 214(4):572-578. PubMed ID: 29580750
[TBL] [Abstract][Full Text] [Related]
31. RNA Sequencing in B-Cell Lymphomas.
Huang DW; Dawood M; Johnson CA; Schmitz R
Methods Mol Biol; 2019; 1956():283-303. PubMed ID: 30779040
[TBL] [Abstract][Full Text] [Related]
32. TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.
Chiu R; Nip KM; Chu J; Birol I
BMC Med Genomics; 2018 Sep; 11(1):79. PubMed ID: 30200994
[TBL] [Abstract][Full Text] [Related]
33. Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data.
Kumar S; Vo AD; Qin F; Li H
Sci Rep; 2016 Feb; 6():21597. PubMed ID: 26862001
[TBL] [Abstract][Full Text] [Related]
34. iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.
Giurato G; De Filippo MR; Rinaldi A; Hashim A; Nassa G; Ravo M; Rizzo F; Tarallo R; Weisz A
BMC Bioinformatics; 2013 Dec; 14():362. PubMed ID: 24330401
[TBL] [Abstract][Full Text] [Related]
35. Combination of RNA- and exome sequencing: Increasing specificity for identification of somatic point mutations and indels in acute leukaemia.
Hansen MC; Herborg LL; Hansen M; Roug AS; Hokland P
Leuk Res; 2016 Dec; 51():27-31. PubMed ID: 27821287
[TBL] [Abstract][Full Text] [Related]
36. Fcirc: A comprehensive pipeline for the exploration of fusion linear and circular RNAs.
Cai Z; Xue H; Xu Y; Köhler J; Cheng X; Dai Y; Zheng J; Wang H
Gigascience; 2020 Jun; 9(6):. PubMed ID: 32470133
[TBL] [Abstract][Full Text] [Related]
37. OutLyzer: software for extracting low-allele-frequency tumor mutations from sequencing background noise in clinical practice.
Muller E; Goardon N; Brault B; Rousselin A; Paimparay G; Legros A; Fouillet R; Bruet O; Tranchant A; Domin F; San C; Quesnelle C; Frebourg T; Ricou A; Krieger S; Vaur D; Castera L
Oncotarget; 2016 Nov; 7(48):79485-79493. PubMed ID: 27825131
[TBL] [Abstract][Full Text] [Related]
38. ALK fusion variants detection by targeted RNA-next generation sequencing and clinical responses to crizotinib in ALK-positive non-small cell lung cancer.
McLeer-Florin A; Duruisseaux M; Pinsolle J; Dubourd S; Mondet J; Phillips Houlbracq M; Magnat N; Fauré J; Chatagnon A; de Fraipont F; Giaj Levra M; Toffart AC; Ferretti G; Hainaut P; Brambilla E; Moro-Sibilot D; Lantuejoul S
Lung Cancer; 2018 Feb; 116():15-24. PubMed ID: 29413046
[TBL] [Abstract][Full Text] [Related]
39. Case Study: Systematic Detection and Prioritization of Gene Fusions in Cancer by RNA-Seq: A DIY Toolkit.
Vats P; Chinnaiyan AM; Kumar-Sinha C
Methods Mol Biol; 2020; 2079():69-79. PubMed ID: 31728962
[TBL] [Abstract][Full Text] [Related]
40. Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data.
Adetunji MO; Lamont SJ; Abasht B; Schmidt CJ
PLoS One; 2019; 14(9):e0216838. PubMed ID: 31545812
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
