350 related articles for article (PubMed ID: 30276743)
1. Identification of Unexpected Protein Modifications by Mass Spectrometry-Based Proteomics.
Ahmadi S; Winter D
Methods Mol Biol; 2019; 1871():225-251. PubMed ID: 30276743
[TBL] [Abstract][Full Text] [Related]
2. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
[TBL] [Abstract][Full Text] [Related]
3. Effective Leveraging of Targeted Search Spaces for Improving Peptide Identification in Tandem Mass Spectrometry Based Proteomics.
Shanmugam AK; Nesvizhskii AI
J Proteome Res; 2015 Dec; 14(12):5169-78. PubMed ID: 26569054
[TBL] [Abstract][Full Text] [Related]
4. Protein Identification from Tandem Mass Spectra by Database Searching.
Edwards NJ
Methods Mol Biol; 2017; 1558():357-380. PubMed ID: 28150247
[TBL] [Abstract][Full Text] [Related]
5. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
[TBL] [Abstract][Full Text] [Related]
6. A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides.
Chick JM; Kolippakkam D; Nusinow DP; Zhai B; Rad R; Huttlin EL; Gygi SP
Nat Biotechnol; 2015 Jul; 33(7):743-9. PubMed ID: 26076430
[TBL] [Abstract][Full Text] [Related]
7. Computational Methods in Mass Spectrometry-Based Proteomics.
Li S; Tang H
Adv Exp Med Biol; 2016; 939():63-89. PubMed ID: 27807744
[TBL] [Abstract][Full Text] [Related]
8. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
Chen Y; Kwon SW; Kim SC; Zhao Y
J Proteome Res; 2005; 4(3):998-1005. PubMed ID: 15952748
[TBL] [Abstract][Full Text] [Related]
9. Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.
Ma CW; Lam H
J Proteome Res; 2014 May; 13(5):2262-71. PubMed ID: 24661115
[TBL] [Abstract][Full Text] [Related]
10. A Cautionary Tale on the Inclusion of Variable Posttranslational Modifications in Database-Dependent Searches of Mass Spectrometry Data.
Svozil J; Baerenfaller K
Methods Enzymol; 2017; 586():433-452. PubMed ID: 28137575
[TBL] [Abstract][Full Text] [Related]
11. MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.
Kong AT; Leprevost FV; Avtonomov DM; Mellacheruvu D; Nesvizhskii AI
Nat Methods; 2017 May; 14(5):513-520. PubMed ID: 28394336
[TBL] [Abstract][Full Text] [Related]
12. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
Heaven MR; Cobbs AL; Nei YW; Gutierrez DB; Herren AW; Gunawardena HP; Caprioli RM; Norris JL
Anal Chem; 2018 Aug; 90(15):8905-8911. PubMed ID: 29984981
[TBL] [Abstract][Full Text] [Related]
13. SpecOMS: A Full Open Modification Search Method Performing All-to-All Spectra Comparisons within Minutes.
David M; Fertin G; Rogniaux H; Tessier D
J Proteome Res; 2017 Aug; 16(8):3030-3038. PubMed ID: 28660767
[TBL] [Abstract][Full Text] [Related]
14. DeltAMT: a statistical algorithm for fast detection of protein modifications from LC-MS/MS data.
Fu Y; Xiu LY; Jia W; Ye D; Sun RX; Qian XH; He SM
Mol Cell Proteomics; 2011 May; 10(5):M110.000455. PubMed ID: 21321130
[TBL] [Abstract][Full Text] [Related]
15. Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval.
Boyne MT; Garcia BA; Li M; Zamdborg L; Wenger CD; Babai S; Kelleher NL
J Proteome Res; 2009 Jan; 8(1):374-9. PubMed ID: 19053528
[TBL] [Abstract][Full Text] [Related]
16. Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data.
Kumar D; Yadav AK; Dash D
Methods Mol Biol; 2017; 1549():17-29. PubMed ID: 27975281
[TBL] [Abstract][Full Text] [Related]
17. Unbiased detection of posttranslational modifications using mass spectrometry.
Savitski MF; Savitski MM
Methods Mol Biol; 2010; 673():203-10. PubMed ID: 20835800
[TBL] [Abstract][Full Text] [Related]
18. Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides.
Bunkenborg J; Matthiesen R
Methods Mol Biol; 2020; 2051():199-230. PubMed ID: 31552630
[TBL] [Abstract][Full Text] [Related]
19. Andromeda: a peptide search engine integrated into the MaxQuant environment.
Cox J; Neuhauser N; Michalski A; Scheltema RA; Olsen JV; Mann M
J Proteome Res; 2011 Apr; 10(4):1794-805. PubMed ID: 21254760
[TBL] [Abstract][Full Text] [Related]
20. The Hybrid Search: A Mass Spectral Library Search Method for Discovery of Modifications in Proteomics.
Burke MC; Mirokhin YA; Tchekhovskoi DV; Markey SP; Heidbrink Thompson J; Larkin C; Stein SE
J Proteome Res; 2017 May; 16(5):1924-1935. PubMed ID: 28367633
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
