These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

317 related articles for article (PubMed ID: 30285154)

  • 1. Why are Hoogsteen base pairs energetically disfavored in A-RNA compared to B-DNA?
    Rangadurai A; Zhou H; Merriman DK; Meiser N; Liu B; Shi H; Szymanski ES; Al-Hashimi HM
    Nucleic Acids Res; 2018 Nov; 46(20):11099-11114. PubMed ID: 30285154
    [TBL] [Abstract][Full Text] [Related]  

  • 2. New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey.
    Zhou H; Hintze BJ; Kimsey IJ; Sathyamoorthy B; Yang S; Richardson JS; Al-Hashimi HM
    Nucleic Acids Res; 2015 Apr; 43(7):3420-33. PubMed ID: 25813047
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Atomic structures of excited state A-T Hoogsteen base pairs in duplex DNA by combining NMR relaxation dispersion, mutagenesis, and chemical shift calculations.
    Shi H; Clay MC; Rangadurai A; Sathyamoorthy B; Case DA; Al-Hashimi HM
    J Biomol NMR; 2018 Apr; 70(4):229-244. PubMed ID: 29675775
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bulge defects in intramolecular pyrimidine.purine.pyrimidine DNA triplexes in solution.
    Wang Y; Patel DJ
    Biochemistry; 1995 Apr; 34(16):5696-704. PubMed ID: 7727429
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics.
    Alvey HS; Gottardo FL; Nikolova EN; Al-Hashimi HM
    Nat Commun; 2014 Sep; 5():4786. PubMed ID: 25185517
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A.
    Sathyamoorthy B; Shi H; Zhou H; Xue Y; Rangadurai A; Merriman DK; Al-Hashimi HM
    Nucleic Acids Res; 2017 May; 45(9):5586-5601. PubMed ID: 28369571
    [TBL] [Abstract][Full Text] [Related]  

  • 7. 15-mer DNA duplexes containing an abasic site are thermodynamically more stable with adjacent purines than with pyrimidines.
    Sági J; Guliaev AB; Singer B
    Biochemistry; 2001 Apr; 40(13):3859-68. PubMed ID: 11300765
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Increasing occurrences and functional roles for high energy purine-pyrimidine base-pairs in nucleic acids.
    Kimsey I; Al-Hashimi HM
    Curr Opin Struct Biol; 2014 Feb; 24():72-80. PubMed ID: 24721455
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The first example of a Hoogsteen base-paired DNA duplex in dynamic equilibrium with a Watson-Crick base-paired duplex--a structural (NMR), kinetic and thermodynamic study.
    Isaksson J; Zamaratski E; Maltseva TV; Agback P; Kumar A; Chattopadhyaya J
    J Biomol Struct Dyn; 2001 Jun; 18(6):783-806. PubMed ID: 11444368
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Direct evidence for (G)O6···H
    Rangadurai A; Kremser J; Shi H; Kreutz C; Al-Hashimi HM
    J Magn Reson; 2019 Nov; 308():106589. PubMed ID: 31539864
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Hoogsteen-paired homopurine [RP-PS]-DNA and homopyrimidine RNA strands form a thermally stable parallel duplex.
    Guga P; Janicka M; Maciaszek A; Rebowska B; Nowak G
    Biophys J; 2007 Nov; 93(10):3567-74. PubMed ID: 17693472
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Watson-Crick base-pairing properties of bicyclo-DNA.
    Bolli M; Trafelet HU; Leumann C
    Nucleic Acids Res; 1996 Dec; 24(23):4660-7. PubMed ID: 8972851
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Theoretical characterization of sulfur-to-selenium substitution in an emissive RNA alphabet: impact on H-bonding potential and photophysical properties.
    Chawla M; Poater A; Besalú-Sala P; Kalra K; Oliva R; Cavallo L
    Phys Chem Chem Phys; 2018 Mar; 20(11):7676-7685. PubMed ID: 29497733
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Parallel-stranded duplex DNA containing blocks of trans purine-purine and purine-pyrimidine base pairs.
    Evertsz EM; Rippe K; Jovin TM
    Nucleic Acids Res; 1994 Aug; 22(16):3293-303. PubMed ID: 8078763
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Revealing A-T and G-C Hoogsteen base pairs in stressed protein-bound duplex DNA.
    Shi H; Kimsey IJ; Gu S; Liu HF; Pham U; Schumacher MA; Al-Hashimi HM
    Nucleic Acids Res; 2021 Dec; 49(21):12540-12555. PubMed ID: 34792150
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix.
    Pilch DS; Levenson C; Shafer RH
    Biochemistry; 1991 Jun; 30(25):6081-8. PubMed ID: 2059618
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The physicochemical essence of the purine·pyrimidine transition mismatches with Watson-Crick geometry in DNA: A·C* versa A*·C. A QM and QTAIM atomistic understanding.
    Brovarets' OO; Hovorun DM
    J Biomol Struct Dyn; 2015; 33(1):28-55. PubMed ID: 24261751
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Alchemical Free-Energy Calculations of Watson-Crick and Hoogsteen Base Pairing Interconversion in DNA.
    Geronimo I; De Vivo M
    J Chem Theory Comput; 2022 Nov; 18(11):6966-6973. PubMed ID: 36201305
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Correlation of crystallographically determined and computationally predicted hydrogen-bonded pairing configurations of nucleic acid bases.
    Ornstein RL; Fresco JR
    Proc Natl Acad Sci U S A; 1983 Sep; 80(17):5171-5. PubMed ID: 6577415
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Recognition of nucleic acid bases and base-pairs by hydrogen bonding to amino acid side-chains.
    Cheng AC; Chen WW; Fuhrmann CN; Frankel AD
    J Mol Biol; 2003 Apr; 327(4):781-96. PubMed ID: 12654263
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.