These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 30285443)

  • 1. Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments.
    Grotz KK; Nueesch MF; Holmstrom ED; Heinz M; Stelzl LS; Schuler B; Hummer G
    J Phys Chem B; 2018 Dec; 122(49):11626-11639. PubMed ID: 30285443
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accurate distance determination of nucleic acids via Förster resonance energy transfer: implications of dye linker length and rigidity.
    Sindbert S; Kalinin S; Nguyen H; Kienzler A; Clima L; Bannwarth W; Appel B; Müller S; Seidel CA
    J Am Chem Soc; 2011 Mar; 133(8):2463-80. PubMed ID: 21291253
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Contribution of fluorophore dynamics and solvation to resonant energy transfer in protein-DNA complexes: a molecular-dynamics study.
    Shoura MJ; Ranatunga RJKU; Harris SA; Nielsen SO; Levene SD
    Biophys J; 2014 Aug; 107(3):700-710. PubMed ID: 25099809
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Complete Kinetic Theory of FRET.
    Eilert T; Kallis E; Nagy J; Röcker C; Michaelis J
    J Phys Chem B; 2018 Dec; 122(49):11677-11694. PubMed ID: 30351105
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Combining Graphical and Analytical Methods with Molecular Simulations To Analyze Time-Resolved FRET Measurements of Labeled Macromolecules Accurately.
    Peulen TO; Opanasyuk O; Seidel CAM
    J Phys Chem B; 2017 Sep; 121(35):8211-8241. PubMed ID: 28709377
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quantitative interpretation of FRET experiments via molecular simulation: force field and validation.
    Best RB; Hofmann H; Nettels D; Schuler B
    Biophys J; 2015 Jun; 108(11):2721-31. PubMed ID: 26039173
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparing the Ability of Enhanced Sampling Molecular Dynamics Methods To Reproduce the Behavior of Fluorescent Labels on Proteins.
    Walczewska-Szewc K; Deplazes E; Corry B
    J Chem Theory Comput; 2015 Jul; 11(7):3455-65. PubMed ID: 26575779
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Oxazine dye-conjugated dna oligonucleotides: Förster resonance energy transfer in view of molecular dye-DNA interactions.
    Kupstat A; Ritschel T; Kumke MU
    Bioconjug Chem; 2011 Dec; 22(12):2546-57. PubMed ID: 22073970
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: a comparative study of ensemble and single-molecule data.
    Dietrich A; Buschmann V; Müller C; Sauer M
    J Biotechnol; 2002 Jan; 82(3):211-31. PubMed ID: 11999691
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Inter-dye distance distributions studied by a combination of single-molecule FRET-filtered lifetime measurements and a weighted accessible volume (wAV) algorithm.
    Höfig H; Gabba M; Poblete S; Kempe D; Fitter J
    Molecules; 2014 Nov; 19(12):19269-91. PubMed ID: 25429558
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes.
    Beierlein FR; Paradas Palomo M; Sharapa DI; Zozulia O; Mokhir A; Clark T
    PLoS One; 2016; 11(7):e0160229. PubMed ID: 27467071
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Indocyanine dyes approach free rotation at the 3' terminus of A-RNA: a comparison with the 5' terminus and consequences for fluorescence resonance energy transfer.
    Milas P; Gamari BD; Parrot L; Krueger BP; Rahmanseresht S; Moore J; Goldner LS
    J Phys Chem B; 2013 Jul; 117(29):8649-58. PubMed ID: 23799279
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Orientational and dynamical heterogeneity of rhodamine 6G terminally attached to a DNA helix revealed by NMR and single-molecule fluorescence spectroscopy.
    Neubauer H; Gaiko N; Berger S; Schaffer J; Eggeling C; Tuma J; Verdier L; Seidel CA; Griesinger C; Volkmer A
    J Am Chem Soc; 2007 Oct; 129(42):12746-55. PubMed ID: 17900110
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Single-Molecule Characterization of Cy3.5 -Cy5.5 Dye Pair for FRET Studies of Nucleic Acids and Nucleosomes.
    Ghoneim M; Musselman CA
    J Fluoresc; 2023 Mar; 33(2):413-421. PubMed ID: 36435903
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Photophysics of backbone fluorescent DNA modifications: reducing uncertainties in FRET.
    Ranjit S; Gurunathan K; Levitus M
    J Phys Chem B; 2009 Jun; 113(22):7861-6. PubMed ID: 19473039
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dynamics of fluorescent dyes attached to G-quadruplex DNA and their effect on FRET experiments.
    Søndergaard S; Aznauryan M; Haustrup EK; Schiøtt B; Birkedal V; Corry B
    Chemphyschem; 2015 Aug; 16(12):2562-70. PubMed ID: 26174803
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The effect of Brownian motion of fluorescent probes on measuring nanoscale distances by Förster resonance energy transfer.
    Badali D; Gradinaru CC
    J Chem Phys; 2011 Jun; 134(22):225102. PubMed ID: 21682537
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computer simulation to investigate the FRET application in DNA hybridization systems.
    Liao JM; Wang YT; Chen CL
    Phys Chem Chem Phys; 2011 Jun; 13(21):10364-71. PubMed ID: 21537495
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Failure of the IDA in FRET Systems at Close Inter-Dye Distances Is Moderated by Frequent Low κ(2) Values.
    Spiegel JD; Fulle S; Kleinschmidt M; Gohlke H; Marian CM
    J Phys Chem B; 2016 Sep; 120(34):8845-62. PubMed ID: 27490865
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Assessing the Current State of Amber Force Field Modifications for DNA.
    Galindo-Murillo R; Robertson JC; Zgarbová M; Šponer J; Otyepka M; Jurečka P; Cheatham TE
    J Chem Theory Comput; 2016 Aug; 12(8):4114-27. PubMed ID: 27300587
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.