185 related articles for article (PubMed ID: 30289469)
1. Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.
Gruber DR; Toner JJ; Miears HL; Shernyukov AV; Kiryutin AS; Lomzov AA; Endutkin AV; Grin IR; Petrova DV; Kupryushkin MS; Yurkovskaya AV; Johnson EC; Okon M; Bagryanskaya EG; Zharkov DO; Smirnov SL
Nucleic Acids Res; 2018 Nov; 46(20):10827-10839. PubMed ID: 30289469
[TBL] [Abstract][Full Text] [Related]
2. Excision of 8-oxoguanine from methylated CpG dinucleotides by human 8-oxoguanine DNA glycosylase.
Kasymov RD; Grin IR; Endutkin AV; Smirnov SL; Ishchenko AA; Saparbaev MK; Zharkov DO
FEBS Lett; 2013 Sep; 587(18):3129-34. PubMed ID: 23954288
[TBL] [Abstract][Full Text] [Related]
3. Structural and dynamics study of DNA dodecamer duplexes that contain un-, hemi-, or fully methylated GATC sites.
Bang J; Bae SH; Park CJ; Lee JH; Choi BS
J Am Chem Soc; 2008 Dec; 130(52):17688-96. PubMed ID: 19108701
[TBL] [Abstract][Full Text] [Related]
4. Combined Effects of Methylated Cytosine and Molecular Crowding on the Thermodynamic Stability of DNA Duplexes.
Tsuruta M; Sugitani Y; Sugimoto N; Miyoshi D
Int J Mol Sci; 2021 Jan; 22(2):. PubMed ID: 33477917
[TBL] [Abstract][Full Text] [Related]
5. Impact of 7,8-dihydro-8-oxoguanine on methylation of the CpG site by Dnmt3a.
Maltseva DV; Baykov AA; Jeltsch A; Gromova ES
Biochemistry; 2009 Feb; 48(6):1361-8. PubMed ID: 19161295
[TBL] [Abstract][Full Text] [Related]
6. Base-flipping propensities of unmethylated, hemimethylated, and fully methylated CpG sites.
Bianchi C; Zangi R
J Phys Chem B; 2013 Feb; 117(8):2348-58. PubMed ID: 23363335
[TBL] [Abstract][Full Text] [Related]
7. Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism.
Arita K; Ariyoshi M; Tochio H; Nakamura Y; Shirakawa M
Nature; 2008 Oct; 455(7214):818-21. PubMed ID: 18772891
[TBL] [Abstract][Full Text] [Related]
8. 8-Oxoguanine Affects DNA Backbone Conformation in the EcoRI Recognition Site and Inhibits Its Cleavage by the Enzyme.
Hoppins JJ; Gruber DR; Miears HL; Kiryutin AS; Kasymov RD; Petrova DV; Endutkin AV; Popov AV; Yurkovskaya AV; Fedechkin SO; Brockerman JA; Zharkov DO; Smirnov SL
PLoS One; 2016; 11(10):e0164424. PubMed ID: 27749894
[TBL] [Abstract][Full Text] [Related]
9. Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2).
Valinluck V; Tsai HH; Rogstad DK; Burdzy A; Bird A; Sowers LC
Nucleic Acids Res; 2004; 32(14):4100-8. PubMed ID: 15302911
[TBL] [Abstract][Full Text] [Related]
10. Effect of CpG methylation on DNA binding protein: molecular dynamics simulations of the homeodomain PITX2 bound to the methylated DNA.
Yang SY; Yang XL; Yao LF; Wang HB; Sun CK
J Mol Graph Model; 2011 Jun; 29(7):920-7. PubMed ID: 21498098
[TBL] [Abstract][Full Text] [Related]
11. Understanding the structural and dynamic consequences of DNA epigenetic modifications: computational insights into cytosine methylation and hydroxymethylation.
Carvalho AT; Gouveia L; Kanna CR; Wärmländer SK; Platts JA; Kamerlin SC
Epigenetics; 2014 Dec; 9(12):1604-12. PubMed ID: 25625845
[TBL] [Abstract][Full Text] [Related]
12. Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement.
Zhang N; Lin C; Huang X; Kolbanovskiy A; Hingerty BE; Amin S; Broyde S; Geacintov NE; Patel DJ
J Mol Biol; 2005 Mar; 346(4):951-65. PubMed ID: 15701509
[TBL] [Abstract][Full Text] [Related]
13. UHRF1 discriminates against binding to fully-methylated CpG-Sites by steric repulsion.
Bianchi C; Zangi R
Biophys Chem; 2013 Jan; 171():38-45. PubMed ID: 23245651
[TBL] [Abstract][Full Text] [Related]
14. The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis.
Zhu J; Kapoor A; Sridhar VV; Agius F; Zhu JK
Curr Biol; 2007 Jan; 17(1):54-9. PubMed ID: 17208187
[TBL] [Abstract][Full Text] [Related]
15. Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase.
Popov AV; Endutkin AV; Vorobjev YN; Zharkov DO
BMC Struct Biol; 2017 May; 17(1):5. PubMed ID: 28482831
[TBL] [Abstract][Full Text] [Related]
16. Effect of 8-oxoguanine on DNA structure and deformability.
Dršata T; Kara M; Zacharias M; Lankaš F
J Phys Chem B; 2013 Oct; 117(39):11617-22. PubMed ID: 24028561
[TBL] [Abstract][Full Text] [Related]
17. Impact of the oxidized guanine lesion spiroiminodihydantoin on the conformation and thermodynamic stability of a 15-mer DNA duplex.
Chinyengetere F; Jamieson ER
Biochemistry; 2008 Feb; 47(8):2584-91. PubMed ID: 18281959
[TBL] [Abstract][Full Text] [Related]
18. Impact of CpG methylation on structure, dynamics and solvation of cAMP DNA responsive element.
Derreumaux S; Chaoui M; Tevanian G; Fermandjian S
Nucleic Acids Res; 2001 Jun; 29(11):2314-26. PubMed ID: 11376150
[TBL] [Abstract][Full Text] [Related]
19. Differential sensitivity to methylated DNA by ETS-family transcription factors is intrinsically encoded in their DNA-binding domains.
Stephens DC; Poon GM
Nucleic Acids Res; 2016 Oct; 44(18):8671-8681. PubMed ID: 27270080
[TBL] [Abstract][Full Text] [Related]
20. Opening dynamics of 8-oxoguanine in DNA.
Every AE; Russu IM
J Mol Recognit; 2013 Apr; 26(4):175-80. PubMed ID: 23456741
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
