148 related articles for article (PubMed ID: 30289715)
1. ASV-ID, a Proteogenomic Workflow To Predict Candidate Protein Isoforms on the Basis of Transcript Evidence.
Jeong SK; Kim CY; Paik YK
J Proteome Res; 2018 Dec; 17(12):4235-4242. PubMed ID: 30289715
[TBL] [Abstract][Full Text] [Related]
2. Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics.
Sajulga R; Mehta S; Kumar P; Johnson JE; Guerrero CR; Ryan MC; Karchin R; Jagtap PD; Griffin TJ
J Proteome Res; 2018 Dec; 17(12):4329-4336. PubMed ID: 30130115
[TBL] [Abstract][Full Text] [Related]
3. Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify.
Komor MA; Pham TV; Hiemstra AC; Piersma SR; Bolijn AS; Schelfhorst T; Delis-van Diemen PM; Tijssen M; Sebra RP; Ashby M; Meijer GA; Jimenez CR; Fijneman RJA
Mol Cell Proteomics; 2017 Oct; 16(10):1850-1863. PubMed ID: 28747380
[TBL] [Abstract][Full Text] [Related]
4. Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases.
Hwang H; Park GW; Kim KH; Lee JY; Lee HK; Ji ES; Park SK; Xu T; Yates JR; Kwon KH; Park YM; Lee HJ; Paik YK; Kim JY; Yoo JS
J Proteome Res; 2015 Dec; 14(12):5028-37. PubMed ID: 26549206
[TBL] [Abstract][Full Text] [Related]
5. Integrated Proteomic Pipeline Using Multiple Search Engines for a Proteogenomic Study with a Controlled Protein False Discovery Rate.
Park GW; Hwang H; Kim KH; Lee JY; Lee HK; Park JY; Ji ES; Park SR; Yates JR; Kwon KH; Park YM; Lee HJ; Paik YK; Kim JY; Yoo JS
J Proteome Res; 2016 Nov; 15(11):4082-4090. PubMed ID: 27537616
[TBL] [Abstract][Full Text] [Related]
6. Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics.
Lobas AA; Pyatnitskiy MA; Chernobrovkin AL; Ilina IY; Karpov DS; Solovyeva EM; Kuznetsova KG; Ivanov MV; Lyssuk EY; Kliuchnikova AA; Voronko OE; Larin SS; Zubarev RA; Gorshkov MV; Moshkovskii SA
J Proteome Res; 2018 May; 17(5):1801-1811. PubMed ID: 29619825
[TBL] [Abstract][Full Text] [Related]
7. Next Generation Proteomic Pipeline for Chromosome-Based Proteomic Research Using NeXtProt and GENCODE Databases.
Hwang H; Park GW; Park JY; Lee HK; Lee JY; Jeong JE; Park SR; Yates JR; Kwon KH; Park YM; Lee HJ; Paik YK; Kim JY; Yoo JS
J Proteome Res; 2017 Dec; 16(12):4425-4434. PubMed ID: 28965411
[TBL] [Abstract][Full Text] [Related]
8. Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2.
He C; Guo J; Tian W; Wong CCL
J Proteome Res; 2021 Dec; 20(12):5294-5303. PubMed ID: 34420305
[TBL] [Abstract][Full Text] [Related]
9. ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching.
Cifani P; Dhabaria A; Chen Z; Yoshimi A; Kawaler E; Abdel-Wahab O; Poirier JT; Kentsis A
J Proteome Res; 2018 Nov; 17(11):3681-3692. PubMed ID: 30295032
[TBL] [Abstract][Full Text] [Related]
10. Detection of alternative splice variants at the proteome level in Aspergillus flavus.
Chang KY; Georgianna DR; Heber S; Payne GA; Muddiman DC
J Proteome Res; 2010 Mar; 9(3):1209-17. PubMed ID: 20047314
[TBL] [Abstract][Full Text] [Related]
11. Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
Mehlferber MM; Jeffery ED; Saquing J; Jordan BT; Sheynkman L; Murali M; Genet G; Acharya BR; Hirschi KK; Sheynkman GM
RNA Biol; 2022 Jan; 19(1):1228-1243. PubMed ID: 36457147
[TBL] [Abstract][Full Text] [Related]
12. Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation.
Sheynkman GM; Shortreed MR; Cesnik AJ; Smith LM
Annu Rev Anal Chem (Palo Alto Calif); 2016 Jun; 9(1):521-45. PubMed ID: 27049631
[TBL] [Abstract][Full Text] [Related]
13. Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes.
Guillot L; Delage L; Viari A; Vandenbrouck Y; Com E; Ritter A; Lavigne R; Marie D; Peterlongo P; Potin P; Pineau C
BMC Genomics; 2019 Jan; 20(1):56. PubMed ID: 30654742
[TBL] [Abstract][Full Text] [Related]
14. JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.
Li Y; Wang X; Cho JH; Shaw TI; Wu Z; Bai B; Wang H; Zhou S; Beach TG; Wu G; Zhang J; Peng J
J Proteome Res; 2016 Jul; 15(7):2309-20. PubMed ID: 27225868
[TBL] [Abstract][Full Text] [Related]
15. Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.
Omenn GS
Biochim Biophys Acta; 2014 May; 1844(5):866-73. PubMed ID: 24211518
[TBL] [Abstract][Full Text] [Related]
16. Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver.
Wu P; Zhang H; Lin W; Hao Y; Ren L; Zhang C; Li N; Wei H; Jiang Y; He F
J Proteome Res; 2014 May; 13(5):2409-19. PubMed ID: 24717071
[TBL] [Abstract][Full Text] [Related]
17. Enhanced protein isoform characterization through long-read proteogenomics.
Miller RM; Jordan BT; Mehlferber MM; Jeffery ED; Chatzipantsiou C; Kaur S; Millikin RJ; Dai Y; Tiberi S; Castaldi PJ; Shortreed MR; Luckey CJ; Conesa A; Smith LM; Deslattes Mays A; Sheynkman GM
Genome Biol; 2022 Mar; 23(1):69. PubMed ID: 35241129
[TBL] [Abstract][Full Text] [Related]
18. Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry.
Chen W; Liu X
J Proteome Res; 2021 Jan; 20(1):261-269. PubMed ID: 33183009
[TBL] [Abstract][Full Text] [Related]
19. A tool for integrating genetic and mass spectrometry-based peptide data: Proteogenomics Viewer: PV: A genome browser-like tool, which includes MS data visualization and peptide identification parameters.
Kroll JE; da Silva VL; de Souza SJ; de Souza GA
Bioessays; 2017 Jul; 39(7):. PubMed ID: 28582591
[TBL] [Abstract][Full Text] [Related]
20. Proteogenomics: From next-generation sequencing (NGS) and mass spectrometry-based proteomics to precision medicine.
Ang MY; Low TY; Lee PY; Wan Mohamad Nazarie WF; Guryev V; Jamal R
Clin Chim Acta; 2019 Nov; 498():38-46. PubMed ID: 31421119
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
