These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

101 related articles for article (PubMed ID: 30295697)

  • 1. Strain-GeMS: optimized subspecies identification from microbiome data based on accurate variant modeling.
    Tan C; Cui W; Cui X; Ning K
    Bioinformatics; 2019 May; 35(10):1789-1791. PubMed ID: 30295697
    [TBL] [Abstract][Full Text] [Related]  

  • 2. metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes.
    Van Rossum T; Costea PI; Paoli L; Alves R; Thielemann R; Sunagawa S; Bork P
    Bioinformatics; 2022 Jan; 38(4):1162-1164. PubMed ID: 34791031
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An omnibus test for differential distribution analysis of microbiome sequencing data.
    Chen J; King E; Deek R; Wei Z; Yu Y; Grill D; Ballman K; Stegle O
    Bioinformatics; 2018 Feb; 34(4):643-651. PubMed ID: 29040451
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MDPbiome: microbiome engineering through prescriptive perturbations.
    García-Jiménez B; de la Rosa T; Wilkinson MD
    Bioinformatics; 2018 Sep; 34(17):i838-i847. PubMed ID: 30423107
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Estimating and testing the microbial causal mediation effect with high-dimensional and compositional microbiome data.
    Wang C; Hu J; Blaser MJ; Li H
    Bioinformatics; 2020 Jan; 36(2):347-355. PubMed ID: 31329243
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Batch effects correction for microbiome data with Dirichlet-multinomial regression.
    Dai Z; Wong SH; Yu J; Wei Y
    Bioinformatics; 2019 Mar; 35(5):807-814. PubMed ID: 30816927
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GenBank as a source to monitor and analyze Host-Microbiome data.
    Ramanan V; Mechery S; Sarkar IN
    Bioinformatics; 2022 Sep; 38(17):4172-4177. PubMed ID: 35801940
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Microbiome Toolbox: methodological approaches to derive and visualize microbiome trajectories.
    Banjac J; Sprenger N; Dogra SK
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36469345
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TADA: phylogenetic augmentation of microbiome samples enhances phenotype classification.
    Sayyari E; Kawas B; Mirarab S
    Bioinformatics; 2019 Jul; 35(14):i31-i40. PubMed ID: 31510701
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A distance-based approach for testing the mediation effect of the human microbiome.
    Zhang J; Wei Z; Chen J
    Bioinformatics; 2018 Jun; 34(11):1875-1883. PubMed ID: 29346509
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing.
    Äijö T; Müller CL; Bonneau R
    Bioinformatics; 2018 Feb; 34(3):372-380. PubMed ID: 28968799
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Integrating phylogenetic and functional data in microbiome studies.
    Douglas GM; Hayes MG; Langille MGI; Borenstein E
    Bioinformatics; 2022 Nov; 38(22):5055-5063. PubMed ID: 36179077
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient computation of contributional diversity metrics from microbiome data with FuncDiv.
    Douglas GM; Kim S; Langille MGI; Shapiro BJ
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36519836
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Canvas: versatile and scalable detection of copy number variants.
    Roller E; Ivakhno S; Lee S; Royce T; Tanner S
    Bioinformatics; 2016 Aug; 32(15):2375-7. PubMed ID: 27153601
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data.
    Murillo GH; You N; Su X; Cui W; Reilly MP; Li M; Ning K; Cui X
    Bioinformatics; 2016 May; 32(10):1486-92. PubMed ID: 26787661
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FastSpar: rapid and scalable correlation estimation for compositional data.
    Watts SC; Ritchie SC; Inouye M; Holt KE
    Bioinformatics; 2019 Mar; 35(6):1064-1066. PubMed ID: 30169561
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Sparse least trimmed squares regression with compositional covariates for high-dimensional data.
    Monti GS; Filzmoser P
    Bioinformatics; 2021 Nov; 37(21):3805-3814. PubMed ID: 34358286
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A novel normalization and differential abundance test framework for microbiome data.
    Ma Y; Luo Y; Jiang H
    Bioinformatics; 2020 Jul; 36(13):3959-3965. PubMed ID: 32311021
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MetaCoMET: a web platform for discovery and visualization of the core microbiome.
    Wang Y; Xu L; Gu YQ; Coleman-Derr D
    Bioinformatics; 2016 Nov; 32(22):3469-3470. PubMed ID: 27485442
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances.
    Tang ZZ; Chen G; Alekseyenko AV
    Bioinformatics; 2016 Sep; 32(17):2618-25. PubMed ID: 27197815
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.