BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

494 related articles for article (PubMed ID: 30298255)

  • 1. Metagenome Assembly and Contig Assignment.
    Zhang Q
    Methods Mol Biol; 2018; 1849():179-192. PubMed ID: 30298255
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
    Wang Y; Leung H; Yiu S; Chin F
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Exploiting topic modeling to boost metagenomic reads binning.
    Zhang R; Cheng Z; Guan J; Zhou S
    BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
    [TBL] [Abstract][Full Text] [Related]  

  • 4. METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs.
    Zhang Z; Zhang L
    BMC Bioinformatics; 2021 Jul; 22(Suppl 10):378. PubMed ID: 34294039
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Metagenomic Assembly: Reconstructing Genomes from Metagenomes.
    Wang Z; Liang JL; Huang LN; Mengoni A; Shu WS
    Methods Mol Biol; 2021; 2242():139-152. PubMed ID: 33961222
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-resolved metagenomics using environmental and clinical samples.
    Kayani MUR; Huang W; Feng R; Chen L
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758906
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GraphBin: refined binning of metagenomic contigs using assembly graphs.
    Mallawaarachchi V; Wickramarachchi A; Lin Y
    Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Practical evaluation of 11 de novo assemblers in metagenome assembly.
    Forouzan E; Shariati P; Mousavi Maleki MS; Karkhane AA; Yakhchali B
    J Microbiol Methods; 2018 Aug; 151():99-105. PubMed ID: 29953874
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Metagenomics Bioinformatic Pipeline.
    Garfias-Gallegos D; Zirión-Martínez C; Bustos-Díaz ED; Arellano-Fernández TV; Lovaco-Flores JA; Espinosa-Jaime A; Avelar-Rivas JA; Sélem-Mójica N
    Methods Mol Biol; 2022; 2512():153-179. PubMed ID: 35818005
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
    Mallawaarachchi V; Lin Y
    J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
    Chen Z; Grim CJ; Ramachandran P; Meng J
    Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
    Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA
    BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
    Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
    Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Normalization of Microbiome Profiling Data.
    McMurdie PJ
    Methods Mol Biol; 2018; 1849():143-168. PubMed ID: 30298253
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome Recovery, Functional Profiling, and Taxonomic Classification from Metagenomes.
    Albanese D; Donati C
    Methods Mol Biol; 2021; 2242():153-172. PubMed ID: 33961223
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.
    Uritskiy GV; DiRuggiero J; Taylor J
    Microbiome; 2018 Sep; 6(1):158. PubMed ID: 30219103
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.