These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 30298401)

  • 1. A Graph-Based Approach for Detecting Sequence Homology in Highly Diverged Repeat Protein Families.
    Wells JN; Marsh JA
    Methods Mol Biol; 2019; 1851():251-261. PubMed ID: 30298401
    [TBL] [Abstract][Full Text] [Related]  

  • 2. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.
    Kaushik S; Nair AG; Mutt E; Subramanian HP; Sowdhamini R
    Bioinformatics; 2016 Feb; 32(3):338-44. PubMed ID: 26454276
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hidden Markov Models for Protein Domain Homology Identification and Analysis.
    Jablonowski K
    Methods Mol Biol; 2017; 1555():47-58. PubMed ID: 28092026
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Filling-in void and sparse regions in protein sequence space by protein-like artificial sequences enables remarkable enhancement in remote homology detection capability.
    Mudgal R; Sowdhamini R; Chandra N; Srinivasan N; Sandhya S
    J Mol Biol; 2014 Feb; 426(4):962-79. PubMed ID: 24316367
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A; Hazelhurst S; Durand PM
    BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ProClust: improved clustering of protein sequences with an extended graph-based approach.
    Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
    Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
    Scheeff ED; Bourne PE
    BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Tracking repeats using significance and transitivity.
    Szklarczyk R; Heringa J
    Bioinformatics; 2004 Aug; 20 Suppl 1():i311-7. PubMed ID: 15262814
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.
    Gibbons TR; Mount SM; Cooper ED; Delwiche CF
    BMC Bioinformatics; 2015 Jul; 16():218. PubMed ID: 26160651
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CLUSS: clustering of protein sequences based on a new similarity measure.
    Kelil A; Wang S; Brzezinski R; Fleury A
    BMC Bioinformatics; 2007 Aug; 8():286. PubMed ID: 17683581
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Improving profile HMM discrimination by adapting transition probabilities.
    Wistrand M; Sonnhammer EL
    J Mol Biol; 2004 May; 338(4):847-54. PubMed ID: 15099750
    [TBL] [Abstract][Full Text] [Related]  

  • 13. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment.
    Wright ES
    BMC Bioinformatics; 2015 Oct; 16():322. PubMed ID: 26445311
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 15. STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification.
    Sasin JM; Kurowski MA; Bujnicki JM
    Bioinformatics; 2003; 19 Suppl 1():i252-4. PubMed ID: 12855467
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CLANS: a Java application for visualizing protein families based on pairwise similarity.
    Frickey T; Lupas A
    Bioinformatics; 2004 Dec; 20(18):3702-4. PubMed ID: 15284097
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detecting distant homologs using phylogenetic tree-based HMMs.
    Qian B; Goldstein RA
    Proteins; 2003 Aug; 52(3):446-53. PubMed ID: 12866055
    [TBL] [Abstract][Full Text] [Related]  

  • 18. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR
    BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Graph-based clustering for finding distant relationships in a large set of protein sequences.
    Kawaji H; Takenaka Y; Matsuda H
    Bioinformatics; 2004 Jan; 20(2):243-52. PubMed ID: 14734316
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
    Huang YM; Bystroff C
    Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.