149 related articles for article (PubMed ID: 30304367)
1. MetaOmics: analysis pipeline and browser-based software suite for transcriptomic meta-analysis.
Ma T; Huo Z; Kuo A; Zhu L; Fang Z; Zeng X; Lin CW; Liu S; Wang L; Liu P; Rahman T; Chang LC; Kim S; Li J; Park Y; Song C; Oesterreich S; Sibille E; Tseng GC
Bioinformatics; 2019 May; 35(9):1597-1599. PubMed ID: 30304367
[TBL] [Abstract][Full Text] [Related]
2. An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection.
Wang X; Kang DD; Shen K; Song C; Lu S; Chang LC; Liao SG; Huo Z; Tang S; Ding Y; Kaminski N; Sibille E; Lin Y; Li J; Tseng GC
Bioinformatics; 2012 Oct; 28(19):2534-6. PubMed ID: 22863766
[TBL] [Abstract][Full Text] [Related]
3. Comparative Pathway Integrator: A Framework of Meta-Analytic Integration of Multiple Transcriptomic Studies for Consensual and Differential Pathway Analysis.
Zeng X; Zong W; Lin CW; Fang Z; Ma T; Lewis DA; Enwright JF; Tseng GC
Genes (Basel); 2020 Jun; 11(6):. PubMed ID: 32599927
[TBL] [Abstract][Full Text] [Related]
4. RepeatCraft: a meta-pipeline for repetitive element de-fragmentation and annotation.
Wong WY; Simakov O
Bioinformatics; 2019 Mar; 35(6):1051-1052. PubMed ID: 30165587
[TBL] [Abstract][Full Text] [Related]
5. DEVEA: an interactive shiny application for Differential Expression analysis, data Visualization and Enrichment Analysis of transcriptomics data.
Riquelme-Perez M; Perez-Sanz F; Deleuze JF; Escartin C; Bonnet E; Brohard S
F1000Res; 2022; 11():711. PubMed ID: 36999088
[TBL] [Abstract][Full Text] [Related]
6. Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration.
Arneson D; Bhattacharya A; Shu L; Mäkinen VP; Yang X
BMC Genomics; 2016 Sep; 17(1):722. PubMed ID: 27612452
[TBL] [Abstract][Full Text] [Related]
7. Meta-analytic principal component analysis in integrative omics application.
Kim S; Kang D; Huo Z; Park Y; Tseng GC
Bioinformatics; 2018 Apr; 34(8):1321-1328. PubMed ID: 29186328
[TBL] [Abstract][Full Text] [Related]
8. BISQUE: locus- and variant-specific conversion of genomic, transcriptomic and proteomic database identifiers.
Meyer MJ; Geske P; Yu H
Bioinformatics; 2016 May; 32(10):1598-600. PubMed ID: 26803163
[TBL] [Abstract][Full Text] [Related]
9. Meta-analysis of cell- specific transcriptomic data using fuzzy c-means clustering discovers versatile viral responsive genes.
Khan A; Katanic D; Thakar J
BMC Bioinformatics; 2017 Jun; 18(1):295. PubMed ID: 28587632
[TBL] [Abstract][Full Text] [Related]
10. Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis.
Malik L; Almodaresi F; Patro R
Bioinformatics; 2018 Oct; 34(19):3265-3272. PubMed ID: 29746620
[TBL] [Abstract][Full Text] [Related]
11. DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data.
Sun Z; Wang T; Deng K; Wang XF; Lafyatis R; Ding Y; Hu M; Chen W
Bioinformatics; 2018 Jan; 34(1):139-146. PubMed ID: 29036318
[TBL] [Abstract][Full Text] [Related]
12. GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.
Magge A; Weissenbacher D; O'Connor K; Tahsin T; Gonzalez-Hernandez G; Scotch M
Bioinformatics; 2020 Dec; 36(20):5120-5121. PubMed ID: 32683454
[TBL] [Abstract][Full Text] [Related]
13. Grimon: graphical interface to visualize multi-omics networks.
Kanai M; Maeda Y; Okada Y
Bioinformatics; 2018 Nov; 34(22):3934-3936. PubMed ID: 29931190
[TBL] [Abstract][Full Text] [Related]
14. myTAI: evolutionary transcriptomics with R.
Drost HG; Gabel A; Liu J; Quint M; Grosse I
Bioinformatics; 2018 May; 34(9):1589-1590. PubMed ID: 29309527
[TBL] [Abstract][Full Text] [Related]
15. MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis.
Kim S; Lin CW; Tseng GC
Bioinformatics; 2016 Jul; 32(13):1966-73. PubMed ID: 27153719
[TBL] [Abstract][Full Text] [Related]
16. Multiomix: a cloud-based platform to infer cancer genomic and epigenomic events associated with gene expression modulation.
Camele G; Menazzi S; Chanfreau H; Marraco A; Hasperué W; Butti MD; Abba MC
Bioinformatics; 2022 Jan; 38(3):866-868. PubMed ID: 34586379
[TBL] [Abstract][Full Text] [Related]
17. RICOPILI: Rapid Imputation for COnsortias PIpeLIne.
Lam M; Awasthi S; Watson HJ; Goldstein J; Panagiotaropoulou G; Trubetskoy V; Karlsson R; Frei O; Fan CC; De Witte W; Mota NR; Mullins N; Brügger K; Lee SH; Wray NR; Skarabis N; Huang H; Neale B; Daly MJ; Mattheisen M; Walters R; Ripke S
Bioinformatics; 2020 Feb; 36(3):930-933. PubMed ID: 31393554
[TBL] [Abstract][Full Text] [Related]
18. Sequential analysis of transcript expression patterns improves survival prediction in multiple cancers.
Mandel J; Avula R; Prochownik EV
BMC Cancer; 2020 Apr; 20(1):297. PubMed ID: 32264880
[TBL] [Abstract][Full Text] [Related]
19. BMDExpress 2: enhanced transcriptomic dose-response analysis workflow.
Phillips JR; Svoboda DL; Tandon A; Patel S; Sedykh A; Mav D; Kuo B; Yauk CL; Yang L; Thomas RS; Gift JS; Davis JA; Olszyk L; Merrick BA; Paules RS; Parham F; Saddler T; Shah RR; Auerbach SS
Bioinformatics; 2019 May; 35(10):1780-1782. PubMed ID: 30329029
[TBL] [Abstract][Full Text] [Related]
20. GeneNoteBook, a collaborative notebook for comparative genomics.
Holmer R; van Velzen R; Geurts R; Bisseling T; de Ridder D; Smit S
Bioinformatics; 2019 Nov; 35(22):4779-4781. PubMed ID: 31199463
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]