326 related articles for article (PubMed ID: 30310060)
1. Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features.
Kai Y; Andricovich J; Zeng Z; Zhu J; Tzatsos A; Peng W
Nat Commun; 2018 Oct; 9(1):4221. PubMed ID: 30310060
[TBL] [Abstract][Full Text] [Related]
2. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs.
Ibn-Salem J; Andrade-Navarro MA
BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198
[TBL] [Abstract][Full Text] [Related]
3. RNA Interactions Are Essential for CTCF-Mediated Genome Organization.
Saldaña-Meyer R; Rodriguez-Hernaez J; Escobar T; Nishana M; Jácome-López K; Nora EP; Bruneau BG; Tsirigos A; Furlan-Magaril M; Skok J; Reinberg D
Mol Cell; 2019 Nov; 76(3):412-422.e5. PubMed ID: 31522988
[TBL] [Abstract][Full Text] [Related]
4. Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress-Gene Response.
Lee DP; Tan WLW; Anene-Nzelu CG; Lee CJM; Li PY; Luu TDA; Chan CX; Tiang Z; Ng SL; Huang X; Efthymios M; Autio MI; Jiang J; Fullwood MJ; Prabhakar S; Lieberman Aiden E; Foo RS
Circulation; 2019 Apr; 139(16):1937-1956. PubMed ID: 30717603
[TBL] [Abstract][Full Text] [Related]
5. Predicting CTCF-mediated chromatin loops using CTCF-MP.
Zhang R; Wang Y; Yang Y; Zhang Y; Ma J
Bioinformatics; 2018 Jul; 34(13):i133-i141. PubMed ID: 29949986
[TBL] [Abstract][Full Text] [Related]
6. YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment.
Beagan JA; Duong MT; Titus KR; Zhou L; Cao Z; Ma J; Lachanski CV; Gillis DR; Phillips-Cremins JE
Genome Res; 2017 Jul; 27(7):1139-1152. PubMed ID: 28536180
[TBL] [Abstract][Full Text] [Related]
7. Deep Learning of Sequence Patterns for CCCTC-Binding Factor-Mediated Chromatin Loop Formation.
Kuang S; Wang L
J Comput Biol; 2021 Feb; 28(2):133-145. PubMed ID: 33232622
[No Abstract] [Full Text] [Related]
8. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
Front Immunol; 2018; 9():425. PubMed ID: 29593713
[TBL] [Abstract][Full Text] [Related]
9. Loop competition and extrusion model predicts CTCF interaction specificity.
Xi W; Beer MA
Nat Commun; 2021 Feb; 12(1):1046. PubMed ID: 33594051
[TBL] [Abstract][Full Text] [Related]
10. CCIP: predicting CTCF-mediated chromatin loops with transitivity.
Wang W; Gao L; Ye Y; Gao Y
Bioinformatics; 2021 Dec; 37(24):4635-4642. PubMed ID: 34289010
[TBL] [Abstract][Full Text] [Related]
11. Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.
Khoury A; Achinger-Kawecka J; Bert SA; Smith GC; French HJ; Luu PL; Peters TJ; Du Q; Parry AJ; Valdes-Mora F; Taberlay PC; Stirzaker C; Statham AL; Clark SJ
Nat Commun; 2020 Jan; 11(1):54. PubMed ID: 31911579
[TBL] [Abstract][Full Text] [Related]
12. Chromatin Domain Organization of the TCRb Locus and Its Perturbation by Ectopic CTCF Binding.
Rawat P; Jalan M; Sadhu A; Kanaujia A; Srivastava M
Mol Cell Biol; 2017 May; 37(9):. PubMed ID: 28137913
[TBL] [Abstract][Full Text] [Related]
13. Neuronal CTCF Is Necessary for Basal and Experience-Dependent Gene Regulation, Memory Formation, and Genomic Structure of BDNF and Arc.
Sams DS; Nardone S; Getselter D; Raz D; Tal M; Rayi PR; Kaphzan H; Hakim O; Elliott E
Cell Rep; 2016 Nov; 17(9):2418-2430. PubMed ID: 27880914
[TBL] [Abstract][Full Text] [Related]
14. The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse.
Kaaij LJT; Mohn F; van der Weide RH; de Wit E; Bühler M
Cell; 2019 Sep; 178(6):1437-1451.e14. PubMed ID: 31491387
[TBL] [Abstract][Full Text] [Related]
15. CLNN-loop: a deep learning model to predict CTCF-mediated chromatin loops in the different cell lines and CTCF-binding sites (CBS) pair types.
Zhang P; Wu Y; Zhou H; Zhou B; Zhang H; Wu H
Bioinformatics; 2022 Sep; 38(19):4497-4504. PubMed ID: 35997565
[TBL] [Abstract][Full Text] [Related]
16. CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops.
Guo Y; Perez AA; Hazelett DJ; Coetzee GA; Rhie SK; Farnham PJ
Genome Biol; 2018 Oct; 19(1):160. PubMed ID: 30296942
[TBL] [Abstract][Full Text] [Related]
17. Local chromatin interactions contribute to expression of the fibrinogen gene cluster.
Espitia Jaimes C; Fish RJ; Neerman-Arbez M
J Thromb Haemost; 2018 Oct; 16(10):2070-2082. PubMed ID: 30039577
[TBL] [Abstract][Full Text] [Related]
18. LATS kinase-mediated CTCF phosphorylation and selective loss of genomic binding.
Luo H; Yu Q; Liu Y; Tang M; Liang M; Zhang D; Xiao TS; Wu L; Tan M; Ruan Y; Bungert J; Lu J
Sci Adv; 2020 Feb; 6(8):eaaw4651. PubMed ID: 32128389
[TBL] [Abstract][Full Text] [Related]
19. PARP1 Stabilizes CTCF Binding and Chromatin Structure To Maintain Epstein-Barr Virus Latency Type.
Lupey-Green LN; Caruso LB; Madzo J; Martin KA; Tan Y; Hulse M; Tempera I
J Virol; 2018 Sep; 92(18):. PubMed ID: 29976663
[TBL] [Abstract][Full Text] [Related]
20. A tour of 3D genome with a focus on CTCF.
Wang DC; Wang W; Zhang L; Wang X
Semin Cell Dev Biol; 2019 Jun; 90():4-11. PubMed ID: 30031214
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]