179 related articles for article (PubMed ID: 30329090)
1. CLIPick: a sensitive peak caller for expression-based deconvolution of HITS-CLIP signals.
Park S; Ahn SH; Cho ES; Cho YK; Jang ES; Chi SW
Nucleic Acids Res; 2018 Nov; 46(21):11153-11168. PubMed ID: 30329090
[TBL] [Abstract][Full Text] [Related]
2. Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts.
Gillen AE; Yamamoto TM; Kline E; Hesselberth JR; Kabos P
BMC Genomics; 2016 May; 17():338. PubMed ID: 27150721
[TBL] [Abstract][Full Text] [Related]
3. PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.
Corcoran DL; Georgiev S; Mukherjee N; Gottwein E; Skalsky RL; Keene JD; Ohler U
Genome Biol; 2011 Aug; 12(8):R79. PubMed ID: 21851591
[TBL] [Abstract][Full Text] [Related]
4. cCLIP-Seq: Retrieval of Chimeric Reads from HITS-CLIP (CLIP-Seq) Libraries.
Alexiou P; Maragkakis M; Mourelatos Z; Vourekas A
Methods Mol Biol; 2018; 1680():87-100. PubMed ID: 29030843
[TBL] [Abstract][Full Text] [Related]
5. Computational analysis of CLIP-seq data.
Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
[TBL] [Abstract][Full Text] [Related]
6. Elucidation of transcriptome-wide microRNA binding sites in human cardiac tissues by Ago2 HITS-CLIP.
Spengler RM; Zhang X; Cheng C; McLendon JM; Skeie JM; Johnson FL; Davidson BL; Boudreau RL
Nucleic Acids Res; 2016 Sep; 44(15):7120-31. PubMed ID: 27418678
[TBL] [Abstract][Full Text] [Related]
7. From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP data.
Bottini S; Hamouda-Tekaya N; Tanasa B; Zaragosi LE; Grandjean V; Repetto E; Trabucchi M
Nucleic Acids Res; 2017 May; 45(9):e71. PubMed ID: 28108660
[TBL] [Abstract][Full Text] [Related]
8. Seq and CLIP through the miRNA world.
Mittal N; Zavolan M
Genome Biol; 2014 Jan; 15(1):202. PubMed ID: 24460822
[TBL] [Abstract][Full Text] [Related]
9. Discovering circRNA-microRNA Interactions from CLIP-Seq Data.
Zhang XQ; Yang JH
Methods Mol Biol; 2018; 1724():193-207. PubMed ID: 29322451
[TBL] [Abstract][Full Text] [Related]
10. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
11. High-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation (HITS-CLIP) reveals Argonaute-associated microRNAs and targets in Schistosoma japonicum.
Zhao J; Luo R; Xu X; Zou Y; Zhang Q; Pan W
Parasit Vectors; 2015 Nov; 8():589. PubMed ID: 26577460
[TBL] [Abstract][Full Text] [Related]
12. Ago HITS-CLIP expands microRNA-mRNA interactions in nucleus and cytoplasm of gastric cancer cells.
Zhang X; Shen B; Cui Y
BMC Cancer; 2019 Jan; 19(1):29. PubMed ID: 30621629
[TBL] [Abstract][Full Text] [Related]
13. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.
Moore MJ; Zhang C; Gantman EC; Mele A; Darnell JC; Darnell RB
Nat Protoc; 2014 Feb; 9(2):263-93. PubMed ID: 24407355
[TBL] [Abstract][Full Text] [Related]
14. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.
Chi SW; Zang JB; Mele A; Darnell RB
Nature; 2009 Jul; 460(7254):479-86. PubMed ID: 19536157
[TBL] [Abstract][Full Text] [Related]
15. A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing.
Chou CH; Lin FM; Chou MT; Hsu SD; Chang TH; Weng SL; Shrestha S; Hsiao CC; Hung JH; Huang HD
BMC Genomics; 2013; 14 Suppl 1(Suppl 1):S2. PubMed ID: 23368412
[TBL] [Abstract][Full Text] [Related]
16. Identification of circRNAs for miRNA Targets by Argonaute2 RNA Immunoprecipitation and Luciferase Screening Assays.
Li Y; Chen B; Huang S
Methods Mol Biol; 2018; 1724():209-218. PubMed ID: 29322452
[TBL] [Abstract][Full Text] [Related]
17. miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA-target interaction data.
Ahadi A; Sablok G; Hutvagner G
Nucleic Acids Res; 2017 Apr; 45(6):e42. PubMed ID: 27903911
[TBL] [Abstract][Full Text] [Related]
18. CLIP-seq analysis of multi-mapped reads discovers novel functional RNA regulatory sites in the human transcriptome.
Zhang Z; Xing Y
Nucleic Acids Res; 2017 Sep; 45(16):9260-9271. PubMed ID: 28934506
[TBL] [Abstract][Full Text] [Related]
19. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak G; Srivastava R; Janga SC
RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
[TBL] [Abstract][Full Text] [Related]
20. CLIPSeqTools--a novel bioinformatics CLIP-seq analysis suite.
Maragkakis M; Alexiou P; Nakaya T; Mourelatos Z
RNA; 2016 Jan; 22(1):1-9. PubMed ID: 26577377
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]