116 related articles for article (PubMed ID: 30334805)
21. Scaffolding pre-assembled contigs using SSPACE.
Boetzer M; Henkel CV; Jansen HJ; Butler D; Pirovano W
Bioinformatics; 2011 Feb; 27(4):578-9. PubMed ID: 21149342
[TBL] [Abstract][Full Text] [Related]
22. Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology.
Ruan J; Jiang L; Chong Z; Gong Q; Li H; Li C; Tao Y; Zheng C; Zhai W; Turissini D; Cannon CH; Lu X; Wu CI
BMC Genomics; 2013 Oct; 14(1):711. PubMed ID: 24134808
[TBL] [Abstract][Full Text] [Related]
23. Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression.
Liu Y; Yu Z; Dinger ME; Li J
Bioinformatics; 2019 Jun; 35(12):2066-2074. PubMed ID: 30407482
[TBL] [Abstract][Full Text] [Related]
24. A novel scaffolding algorithm based on contig error correction and path extension.
Li M; Tang L; Liao Z; Luo J; Wu F; Pan Y; Wang J
IEEE/ACM Trans Comput Biol Bioinform; 2018 Jul; ():. PubMed ID: 30040649
[TBL] [Abstract][Full Text] [Related]
25. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
26. PERGA: a paired-end read guided de novo assembler for extending contigs using SVM and look ahead approach.
Zhu X; Leung HC; Chin FY; Yiu SM; Quan G; Liu B; Wang Y
PLoS One; 2014; 9(12):e114253. PubMed ID: 25461763
[TBL] [Abstract][Full Text] [Related]
27. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
[TBL] [Abstract][Full Text] [Related]
28. Comparison of ONT and CCS sequencing technologies on the polyploid genome of a medicinal plant showed that high error rate of ONT reads are not suitable for self-correction.
Zeng P; Tian Z; Han Y; Zhang W; Zhou T; Peng Y; Hu H; Cai J
Chin Med; 2022 Aug; 17(1):94. PubMed ID: 35945546
[TBL] [Abstract][Full Text] [Related]
29. Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly.
Huptas C; Scherer S; Wenning M
BMC Res Notes; 2016 May; 9():269. PubMed ID: 27176120
[TBL] [Abstract][Full Text] [Related]
30. EPGA: de novo assembly using the distributions of reads and insert size.
Luo J; Wang J; Zhang Z; Wu FX; Li M; Pan Y
Bioinformatics; 2015 Mar; 31(6):825-33. PubMed ID: 25406329
[TBL] [Abstract][Full Text] [Related]
31. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references.
Bao E; Jiang T; Girke T
Bioinformatics; 2014 Jun; 30(12):i319-i328. PubMed ID: 24932000
[TBL] [Abstract][Full Text] [Related]
32. A new strategy for better genome assembly from very short reads.
Ji Y; Shi Y; Ding G; Li Y
BMC Bioinformatics; 2011 Dec; 12():493. PubMed ID: 22208765
[TBL] [Abstract][Full Text] [Related]
33. SOPRA: Scaffolding algorithm for paired reads via statistical optimization.
Dayarian A; Michael TP; Sengupta AM
BMC Bioinformatics; 2010 Jun; 11():345. PubMed ID: 20576136
[TBL] [Abstract][Full Text] [Related]
34. dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies.
Yavas G; Hong H; Xiao W
BMC Genomics; 2019 Sep; 20(1):706. PubMed ID: 31510940
[TBL] [Abstract][Full Text] [Related]
35. A de novo next generation genomic sequence assembler based on string graph and MapReduce cloud computing framework.
Chang YJ; Chen CC; Chen CL; Ho JM
BMC Genomics; 2012; 13 Suppl 7(Suppl 7):S28. PubMed ID: 23282094
[TBL] [Abstract][Full Text] [Related]
36. AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads.
Huang S; He X; Wang G; Bao E
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33621981
[TBL] [Abstract][Full Text] [Related]
37. Misassembly detection using paired-end sequence reads and optical mapping data.
Muggli MD; Puglisi SJ; Ronen R; Boucher C
Bioinformatics; 2015 Jun; 31(12):i80-8. PubMed ID: 26072512
[TBL] [Abstract][Full Text] [Related]
38. BASE: a practical de novo assembler for large genomes using long NGS reads.
Liu B; Liu CM; Li D; Li Y; Ting HF; Yiu SM; Luo R; Lam TW
BMC Genomics; 2016 Aug; 17 Suppl 5(Suppl 5):499. PubMed ID: 27586129
[TBL] [Abstract][Full Text] [Related]
39. Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly.
Sameith K; Roscito JG; Hiller M
Brief Bioinform; 2017 Jan; 18(1):1-8. PubMed ID: 26868358
[TBL] [Abstract][Full Text] [Related]
40. Optimizing information in Next-Generation-Sequencing (NGS) reads for improving de novo genome assembly.
Liu T; Tsai CH; Lee WB; Chiang JH
PLoS One; 2013; 8(7):e69503. PubMed ID: 23922726
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
