BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

219 related articles for article (PubMed ID: 30341161)

  • 21. Repeat associated mechanisms of genome evolution and function revealed by the
    Thybert D; Roller M; Navarro FCP; Fiddes I; Streeter I; Feig C; Martin-Galvez D; Kolmogorov M; Janoušek V; Akanni W; Aken B; Aldridge S; Chakrapani V; Chow W; Clarke L; Cummins C; Doran A; Dunn M; Goodstadt L; Howe K; Howell M; Josselin AA; Karn RC; Laukaitis CM; Jingtao L; Martin F; Muffato M; Nachtweide S; Quail MA; Sisu C; Stanke M; Stefflova K; Van Oosterhout C; Veyrunes F; Ward B; Yang F; Yazdanifar G; Zadissa A; Adams DJ; Brazma A; Gerstein M; Paten B; Pham S; Keane TM; Odom DT; Flicek P
    Genome Res; 2018 Apr; 28(4):448-459. PubMed ID: 29563166
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads.
    Du H; Liang C
    Nat Commun; 2019 Nov; 10(1):5360. PubMed ID: 31767853
    [TBL] [Abstract][Full Text] [Related]  

  • 23. AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads.
    Huang S; He X; Wang G; Bao E
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33621981
    [TBL] [Abstract][Full Text] [Related]  

  • 24. De novo assembly of the
    Dudchenko O; Batra SS; Omer AD; Nyquist SK; Hoeger M; Durand NC; Shamim MS; Machol I; Lander ES; Aiden AP; Aiden EL
    Science; 2017 Apr; 356(6333):92-95. PubMed ID: 28336562
    [TBL] [Abstract][Full Text] [Related]  

  • 25. BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.
    Staňková H; Hastie AR; Chan S; Vrána J; Tulpová Z; Kubaláková M; Visendi P; Hayashi S; Luo M; Batley J; Edwards D; Doležel J; Šimková H
    Plant Biotechnol J; 2016 Jul; 14(7):1523-31. PubMed ID: 26801360
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Benchmarking multi-platform sequencing technologies for human genome assembly.
    Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).
    Kuderna LFK; Tomlinson C; Hillier LW; Tran A; Fiddes IT; Armstrong J; Laayouni H; Gordon D; Huddleston J; Garcia Perez R; Povolotskaya I; Serres Armero A; Gómez Garrido J; Ho D; Ribeca P; Alioto T; Green RE; Paten B; Navarro A; Betranpetit J; Herrero J; Eichler EE; Sharp AJ; Feuk L; Warren WC; Marques-Bonet T
    Gigascience; 2017 Nov; 6(11):1-6. PubMed ID: 29092041
    [TBL] [Abstract][Full Text] [Related]  

  • 28. An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.
    Clavijo BJ; Venturini L; Schudoma C; Accinelli GG; Kaithakottil G; Wright J; Borrill P; Kettleborough G; Heavens D; Chapman H; Lipscombe J; Barker T; Lu FH; McKenzie N; Raats D; Ramirez-Gonzalez RH; Coince A; Peel N; Percival-Alwyn L; Duncan O; Trösch J; Yu G; Bolser DM; Namaati G; Kerhornou A; Spannagl M; Gundlach H; Haberer G; Davey RP; Fosker C; Palma FD; Phillips AL; Millar AH; Kersey PJ; Uauy C; Krasileva KV; Swarbreck D; Bevan MW; Clark MD
    Genome Res; 2017 May; 27(5):885-896. PubMed ID: 28420692
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Comparison of ONT and CCS sequencing technologies on the polyploid genome of a medicinal plant showed that high error rate of ONT reads are not suitable for self-correction.
    Zeng P; Tian Z; Han Y; Zhang W; Zhou T; Peng Y; Hu H; Cai J
    Chin Med; 2022 Aug; 17(1):94. PubMed ID: 35945546
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Fast and accurate de novo genome assembly from long uncorrected reads.
    Vaser R; Sović I; Nagarajan N; Šikić M
    Genome Res; 2017 May; 27(5):737-746. PubMed ID: 28100585
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A new strategy for better genome assembly from very short reads.
    Ji Y; Shi Y; Ding G; Li Y
    BMC Bioinformatics; 2011 Dec; 12():493. PubMed ID: 22208765
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries.
    Lu FH; McKenzie N; Kettleborough G; Heavens D; Clark MD; Bevan MW
    Gigascience; 2018 May; 7(5):. PubMed ID: 29762659
    [TBL] [Abstract][Full Text] [Related]  

  • 33. One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly.
    Koren S; Phillippy AM
    Curr Opin Microbiol; 2015 Feb; 23():110-20. PubMed ID: 25461581
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.
    Burton JN; Adey A; Patwardhan RP; Qiu R; Kitzman JO; Shendure J
    Nat Biotechnol; 2013 Dec; 31(12):1119-25. PubMed ID: 24185095
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
    English AC; Richards S; Han Y; Wang M; Vee V; Qu J; Qin X; Muzny DM; Reid JG; Worley KC; Gibbs RA
    PLoS One; 2012; 7(11):e47768. PubMed ID: 23185243
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements.
    Gui S; Peng J; Wang X; Wu Z; Cao R; Salse J; Zhang H; Zhu Z; Xia Q; Quan Z; Shu L; Ke W; Ding Y
    Plant J; 2018 May; 94(4):721-734. PubMed ID: 29575237
    [TBL] [Abstract][Full Text] [Related]  

  • 37. CISA: contig integrator for sequence assembly of bacterial genomes.
    Lin SH; Liao YC
    PLoS One; 2013; 8(3):e60843. PubMed ID: 23556006
    [TBL] [Abstract][Full Text] [Related]  

  • 38. CAR: contig assembly of prokaryotic draft genomes using rearrangements.
    Lu CL; Chen KT; Huang SY; Chiu HT
    BMC Bioinformatics; 2014 Nov; 15(1):381. PubMed ID: 25431302
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species.
    Luo MC; Ma Y; You FM; Anderson OD; Kopecký D; Simková H; Safár J; Dolezel J; Gill B; McGuire PE; Dvorak J
    BMC Genomics; 2010 Feb; 11():122. PubMed ID: 20170511
    [TBL] [Abstract][Full Text] [Related]  

  • 40. LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes.
    Frenkel Z; Paux E; Mester D; Feuillet C; Korol A
    BMC Bioinformatics; 2010 Nov; 11():584. PubMed ID: 21118513
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.