264 related articles for article (PubMed ID: 30346483)
1. methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing.
Ren X; Kuan PF
Bioinformatics; 2019 Jun; 35(11):1958-1959. PubMed ID: 30346483
[TBL] [Abstract][Full Text] [Related]
2. A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.
Meng J; Lu Z; Liu H; Zhang L; Zhang S; Chen Y; Rao MK; Huang Y
Methods; 2014 Oct; 69(3):274-81. PubMed ID: 24979058
[TBL] [Abstract][Full Text] [Related]
3. missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Phipson B; Maksimovic J; Oshlack A
Bioinformatics; 2016 Jan; 32(2):286-8. PubMed ID: 26424855
[TBL] [Abstract][Full Text] [Related]
4. RCP: a novel probe design bias correction method for Illumina Methylation BeadChip.
Niu L; Xu Z; Taylor JA
Bioinformatics; 2016 Sep; 32(17):2659-63. PubMed ID: 27153672
[TBL] [Abstract][Full Text] [Related]
5. PoDCall: positive droplet calling and normalization of droplet digital PCR DNA methylation data.
Jeanmougin M; Brodal HP; Dietrichson Pharo H; Vedeld HM; Lind GE
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36448696
[TBL] [Abstract][Full Text] [Related]
6. ideal: an R/Bioconductor package for interactive differential expression analysis.
Marini F; Linke J; Binder H
BMC Bioinformatics; 2020 Dec; 21(1):565. PubMed ID: 33297942
[TBL] [Abstract][Full Text] [Related]
7. EnMCB: an R/bioconductor package for predicting disease progression based on methylation correlated blocks using ensemble models.
Yu X; Kong DX
Bioinformatics; 2021 Nov; 37(22):4282-4284. PubMed ID: 34050729
[TBL] [Abstract][Full Text] [Related]
8. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
Chiesa M; Colombo GI; Piacentini L
Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
[TBL] [Abstract][Full Text] [Related]
9. ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles.
Silva TC; Coetzee SG; Gull N; Yao L; Hazelett DJ; Noushmehr H; Lin DC; Berman BP
Bioinformatics; 2019 Jun; 35(11):1974-1977. PubMed ID: 30364927
[TBL] [Abstract][Full Text] [Related]
10. GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.
Marini F; Ludt A; Linke J; Strauch K
BMC Bioinformatics; 2021 Dec; 22(1):610. PubMed ID: 34949163
[TBL] [Abstract][Full Text] [Related]
11. BPRMeth: a flexible Bioconductor package for modelling methylation profiles.
Kapourani CA; Sanguinetti G
Bioinformatics; 2018 Jul; 34(14):2485-2486. PubMed ID: 29522078
[TBL] [Abstract][Full Text] [Related]
12. ChAMP: updated methylation analysis pipeline for Illumina BeadChips.
Tian Y; Morris TJ; Webster AP; Yang Z; Beck S; Feber A; Teschendorff AE
Bioinformatics; 2017 Dec; 33(24):3982-3984. PubMed ID: 28961746
[TBL] [Abstract][Full Text] [Related]
13. ebGSEA: an improved Gene Set Enrichment Analysis method for Epigenome-Wide-Association Studies.
Dong D; Tian Y; Zheng SC; Teschendorff AE
Bioinformatics; 2019 Sep; 35(18):3514-3516. PubMed ID: 30715212
[TBL] [Abstract][Full Text] [Related]
14. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
[TBL] [Abstract][Full Text] [Related]
15. ngsReports: a Bioconductor package for managing FastQC reports and other NGS related log files.
Ward CM; To TH; Pederson SM
Bioinformatics; 2020 Apr; 36(8):2587-2588. PubMed ID: 31841127
[TBL] [Abstract][Full Text] [Related]
16. RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip.
Xu Z; Langie SA; De Boever P; Taylor JA; Niu L
BMC Genomics; 2017 Jan; 18(1):4. PubMed ID: 28049437
[TBL] [Abstract][Full Text] [Related]
17. pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components.
Marini F; Binder H
BMC Bioinformatics; 2019 Jun; 20(1):331. PubMed ID: 31195976
[TBL] [Abstract][Full Text] [Related]
18. easyRNASeq: a bioconductor package for processing RNA-Seq data.
Delhomme N; Padioleau I; Furlong EE; Steinmetz LM
Bioinformatics; 2012 Oct; 28(19):2532-3. PubMed ID: 22847932
[TBL] [Abstract][Full Text] [Related]
19. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
[TBL] [Abstract][Full Text] [Related]
20. breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data.
Porubsky D; Sanders AD; Taudt A; Colomé-Tatché M; Lansdorp PM; Guryev V
Bioinformatics; 2020 Feb; 36(4):1260-1261. PubMed ID: 31504176
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
