181 related articles for article (PubMed ID: 30346493)
21. TALE: Transformer-based protein function Annotation with joint sequence-Label Embedding.
Cao Y; Shen Y
Bioinformatics; 2021 Sep; 37(18):2825-2833. PubMed ID: 33755048
[TBL] [Abstract][Full Text] [Related]
22. Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding.
Liu Y; Yuan H; Zhang Q; Wang Z; Xiong S; Wen N; Zhang Y
Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37856335
[TBL] [Abstract][Full Text] [Related]
23. LZW-Kernel: fast kernel utilizing variable length code blocks from LZW compressors for protein sequence classification.
Filatov G; Bauwens B; Kertész-Farkas A
Bioinformatics; 2018 Oct; 34(19):3281-3288. PubMed ID: 29741583
[TBL] [Abstract][Full Text] [Related]
24. SNN6mA: Improved DNA N6-methyladenine site prediction using Siamese network-based feature embedding.
Yu X; Hu J; Zhang Y
Comput Biol Med; 2023 Nov; 166():107533. PubMed ID: 37793205
[TBL] [Abstract][Full Text] [Related]
25. WMSA: a novel method for multiple sequence alignment of DNA sequences.
Wei Y; Zou Q; Tang F; Yu L
Bioinformatics; 2022 Nov; 38(22):5019-5025. PubMed ID: 36179076
[TBL] [Abstract][Full Text] [Related]
26. PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index.
Almodaresi F; Zakeri M; Patro R
Bioinformatics; 2021 Nov; 37(22):4048-4055. PubMed ID: 34117875
[TBL] [Abstract][Full Text] [Related]
27. ProteInfer, deep neural networks for protein functional inference.
Sanderson T; Bileschi ML; Belanger D; Colwell LJ
Elife; 2023 Feb; 12():. PubMed ID: 36847334
[TBL] [Abstract][Full Text] [Related]
28. Parallelization of MAFFT for large-scale multiple sequence alignments.
Nakamura T; Yamada KD; Tomii K; Katoh K
Bioinformatics; 2018 Jul; 34(14):2490-2492. PubMed ID: 29506019
[TBL] [Abstract][Full Text] [Related]
29. Proper evaluation of alignment-free network comparison methods.
Yaveroğlu ÖN; Milenković T; Pržulj N
Bioinformatics; 2015 Aug; 31(16):2697-704. PubMed ID: 25810431
[TBL] [Abstract][Full Text] [Related]
30. MAGNA: Maximizing Accuracy in Global Network Alignment.
Saraph V; Milenković T
Bioinformatics; 2014 Oct; 30(20):2931-40. PubMed ID: 25015987
[TBL] [Abstract][Full Text] [Related]
31. Fast and accurate phylogeny reconstruction using filtered spaced-word matches.
Leimeister CA; Sohrabi-Jahromi S; Morgenstern B
Bioinformatics; 2017 Apr; 33(7):971-979. PubMed ID: 28073754
[TBL] [Abstract][Full Text] [Related]
32. AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints.
Profiti G; Fariselli P; Casadio R
Bioinformatics; 2015 Dec; 31(23):3841-3. PubMed ID: 26231432
[TBL] [Abstract][Full Text] [Related]
33. Biological sequence modeling with convolutional kernel networks.
Chen D; Jacob L; Mairal J
Bioinformatics; 2019 Sep; 35(18):3294-3302. PubMed ID: 30753280
[TBL] [Abstract][Full Text] [Related]
34. Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification.
Borozan I; Watt S; Ferretti V
Bioinformatics; 2015 May; 31(9):1396-404. PubMed ID: 25573913
[TBL] [Abstract][Full Text] [Related]
35. Protein multiple sequence alignment benchmarking through secondary structure prediction.
Le Q; Sievers F; Higgins DG
Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
[TBL] [Abstract][Full Text] [Related]
36. ReSimNet: drug response similarity prediction using Siamese neural networks.
Jeon M; Park D; Lee J; Jeon H; Ko M; Kim S; Choi Y; Tan AC; Kang J
Bioinformatics; 2019 Dec; 35(24):5249-5256. PubMed ID: 31116384
[TBL] [Abstract][Full Text] [Related]
37. DeepLncLoc: a deep learning framework for long non-coding RNA subcellular localization prediction based on subsequence embedding.
Zeng M; Wu Y; Lu C; Zhang F; Wu FX; Li M
Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34498677
[TBL] [Abstract][Full Text] [Related]
38. Graph2MDA: a multi-modal variational graph embedding model for predicting microbe-drug associations.
Deng L; Huang Y; Liu X; Liu H
Bioinformatics; 2022 Jan; 38(4):1118-1125. PubMed ID: 34864873
[TBL] [Abstract][Full Text] [Related]
39. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
Hu J; Reinert K
Bioinformatics; 2015 Feb; 31(3):363-72. PubMed ID: 25282642
[TBL] [Abstract][Full Text] [Related]
40. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
Zhou H; Zhou Y
Bioinformatics; 2005 Sep; 21(18):3615-21. PubMed ID: 16020471
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
