417 related articles for article (PubMed ID: 30346939)
1. De novo assembly of haplotype-resolved genomes with trio binning.
Koren S; Rhie A; Walenz BP; Dilthey AT; Bickhart DM; Kingan SB; Hiendleder S; Williams JL; Smith TPL; Phillippy AM
Nat Biotechnol; 2018 Oct; ():. PubMed ID: 30346939
[TBL] [Abstract][Full Text] [Related]
2. A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning.
Yen EC; McCarthy SA; Galarza JA; Generalovic TN; Pelan S; Nguyen P; Meier JI; Warren IA; Mappes J; Durbin R; Jiggins CD
Gigascience; 2020 Aug; 9(8):. PubMed ID: 32808665
[TBL] [Abstract][Full Text] [Related]
3. Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.
Rice ES; Koren S; Rhie A; Heaton MP; Kalbfleisch TS; Hardy T; Hackett PH; Bickhart DM; Rosen BD; Ley BV; Maurer NW; Green RE; Phillippy AM; Petersen JL; Smith TPL
Gigascience; 2020 Apr; 9(4):. PubMed ID: 32242610
[TBL] [Abstract][Full Text] [Related]
4. Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning.
Delorean EE; Youngblood RC; Simpson SA; Schoonmaker AN; Scheffler BE; Rutter WB; Hulse-Kemp AM
Front Plant Sci; 2023; 14():1184112. PubMed ID: 38034563
[TBL] [Abstract][Full Text] [Related]
5. Accurate haplotype-resolved assembly reveals the origin of structural variants for human trios.
Xu M; Guo L; Du X; Li L; Peters BA; Deng L; Wang O; Chen F; Wang J; Jiang Z; Han J; Ni M; Yang H; Xu X; Liu X; Huang J; Fan G
Bioinformatics; 2021 Aug; 37(15):2095-2102. PubMed ID: 33538292
[TBL] [Abstract][Full Text] [Related]
6. Gamete Binning to Achieve Haplotype-Resolved Genome Assembly.
Sun H; Campoy JA; Schneeberger K
Methods Mol Biol; 2023; 2590():201-218. PubMed ID: 36335501
[TBL] [Abstract][Full Text] [Related]
7. A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Heaton MP; Smith TPL; Bickhart DM; Vander Ley BL; Kuehn LA; Oppenheimer J; Shafer WR; Schuetze FT; Stroud B; McClure JC; Barfield JP; Blackburn HD; Kalbfleisch TS; Davenport KM; Kuhn KL; Green RE; Shapiro B; Rosen BD
J Hered; 2021 Mar; 112(2):184-191. PubMed ID: 33438035
[TBL] [Abstract][Full Text] [Related]
8. Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.
Low WY; Tearle R; Liu R; Koren S; Rhie A; Bickhart DM; Rosen BD; Kronenberg ZN; Kingan SB; Tseng E; Thibaud-Nissen F; Martin FJ; Billis K; Ghurye J; Hastie AR; Lee J; Pang AWC; Heaton MP; Phillippy AM; Hiendleder S; Smith TPL; Williams JL
Nat Commun; 2020 Apr; 11(1):2071. PubMed ID: 32350247
[TBL] [Abstract][Full Text] [Related]
9. Hybrid
Muthusamy PV; Vakayil Mani R; Kumari S; Kaur M; Bhaskar B; Raghavan Pillai R; Sajeev Kumar T; Anilkumar TV; Singh NS
Front Genet; 2024; 15():1338224. PubMed ID: 38510276
[TBL] [Abstract][Full Text] [Related]
10. Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.
Campoy JA; Sun H; Goel M; Jiao WB; Folz-Donahue K; Wang N; Rubio M; Liu C; Kukat C; Ruiz D; Huettel B; Schneeberger K
Genome Biol; 2020 Dec; 21(1):306. PubMed ID: 33372615
[TBL] [Abstract][Full Text] [Related]
11. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
Cheng H; Concepcion GT; Feng X; Zhang H; Li H
Nat Methods; 2021 Feb; 18(2):170-175. PubMed ID: 33526886
[TBL] [Abstract][Full Text] [Related]
12. Chromosome-scale, haplotype-resolved assembly of human genomes.
Garg S; Fungtammasan A; Carroll A; Chou M; Schmitt A; Zhou X; Mac S; Peluso P; Hatas E; Ghurye J; Maguire J; Mahmoud M; Cheng H; Heller D; Zook JM; Moemke T; Marschall T; Sedlazeck FJ; Aach J; Chin CS; Church GM; Li H
Nat Biotechnol; 2021 Mar; 39(3):309-312. PubMed ID: 33288905
[TBL] [Abstract][Full Text] [Related]
13. Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids.
Lötter A; Duong TA; Candotti J; Mizrachi E; Wegrzyn JL; Myburg AA
Gigascience; 2022 Dec; 12():. PubMed ID: 37632754
[TBL] [Abstract][Full Text] [Related]
14. A Reference Genome Assembly of American Bison, Bison bison bison.
Oppenheimer J; Rosen BD; Heaton MP; Vander Ley BL; Shafer WR; Schuetze FT; Stroud B; Kuehn LA; McClure JC; Barfield JP; Blackburn HD; Kalbfleisch TS; Bickhart DM; Davenport KM; Kuhn KL; Green RE; Shapiro B; Smith TPL
J Hered; 2021 Mar; 112(2):174-183. PubMed ID: 33595645
[TBL] [Abstract][Full Text] [Related]
15. phasebook: haplotype-aware de novo assembly of diploid genomes from long reads.
Luo X; Kang X; Schönhuth A
Genome Biol; 2021 Oct; 22(1):299. PubMed ID: 34706745
[TBL] [Abstract][Full Text] [Related]
16. Assessing Bos taurus introgression in the UOA Bos indicus assembly.
Naji MM; Utsunomiya YT; Sölkner J; Rosen BD; Mészáros G
Genet Sel Evol; 2021 Dec; 53(1):96. PubMed ID: 34922445
[TBL] [Abstract][Full Text] [Related]
17. Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis).
Bredemeyer KR; Harris AJ; Li G; Zhao L; Foley NM; Roelke-Parker M; O'Brien SJ; Lyons LA; Warren WC; Murphy WJ
J Hered; 2021 Mar; 112(2):165-173. PubMed ID: 33305796
[TBL] [Abstract][Full Text] [Related]
18. Complete mitochondrial genomes of Bos taurus and Bos indicus provide new insights into intra-species variation, taxonomy and domestication.
Hiendleder S; Lewalski H; Janke A
Cytogenet Genome Res; 2008; 120(1-2):150-6. PubMed ID: 18467841
[TBL] [Abstract][Full Text] [Related]
19. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB
Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078
[TBL] [Abstract][Full Text] [Related]
20. gcaPDA: a haplotype-resolved diploid assembler.
Xie M; Yang L; Jiang C; Wu S; Luo C; Yang X; He L; Chen S; Deng T; Ye M; Yan J; Yang N
BMC Bioinformatics; 2022 Feb; 23(1):68. PubMed ID: 35164674
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
