BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

558 related articles for article (PubMed ID: 30352611)

  • 21. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis.
    Johnson JS; Spakowicz DJ; Hong BY; Petersen LM; Demkowicz P; Chen L; Leopold SR; Hanson BM; Agresta HO; Gerstein M; Sodergren E; Weinstock GM
    Nat Commun; 2019 Nov; 10(1):5029. PubMed ID: 31695033
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
    Schloss PD
    mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Effects of Waterlogging on Soybean Rhizosphere Bacterial Community Using V4, LoopSeq, and PacBio 16S rRNA Sequence.
    Yu T; Cheng L; Liu Q; Wang S; Zhou Y; Zhong H; Tang M; Nian H; Lian T
    Microbiol Spectr; 2022 Feb; 10(1):e0201121. PubMed ID: 35171049
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
    Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
    mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Microbial Community Profiling Protocol with Full-length 16S rRNA Sequences and Emu.
    Curry KD; Soriano S; Nute MG; Villapol S; Dilthey A; Treangen TJ
    Curr Protoc; 2024 Mar; 4(3):e978. PubMed ID: 38511467
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
    J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data.
    Curry KD; Wang Q; Nute MG; Tyshaieva A; Reeves E; Soriano S; Wu Q; Graeber E; Finzer P; Mendling W; Savidge T; Villapol S; Dilthey A; Treangen TJ
    Nat Methods; 2022 Jul; 19(7):845-853. PubMed ID: 35773532
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
    Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
    [TBL] [Abstract][Full Text] [Related]  

  • 30. The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology.
    Jeong J; Yun K; Mun S; Chung WH; Choi SY; Nam YD; Lim MY; Hong CP; Park C; Ahn YJ; Han K
    Sci Rep; 2021 Jan; 11(1):1727. PubMed ID: 33462291
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Towards Quantitative Microbiome Community Profiling Using Internal Standards.
    Lin Y; Gifford S; Ducklow H; Schofield O; Cassar N
    Appl Environ Microbiol; 2019 Mar; 85(5):. PubMed ID: 30552195
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax).
    Dueholm MS; Andersen KS; McIlroy SJ; Kristensen JM; Yashiro E; Karst SM; Albertsen M; Nielsen PH
    mBio; 2020 Sep; 11(5):. PubMed ID: 32963001
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Optimized bacterial community characterization through full-length 16S rRNA gene sequencing utilizing MinION nanopore technology.
    Bertolo A; Valido E; Stoyanov J
    BMC Microbiol; 2024 Feb; 24(1):58. PubMed ID: 38365589
    [TBL] [Abstract][Full Text] [Related]  

  • 34. High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution.
    Callahan BJ; Wong J; Heiner C; Oh S; Theriot CM; Gulati AS; McGill SK; Dougherty MK
    Nucleic Acids Res; 2019 Oct; 47(18):e103. PubMed ID: 31269198
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Genome-Based Targeted Sequencing as a Reproducible Microbial Community Profiling Assay.
    Benjamino J; Leopold B; Phillips D; Adams MD
    mSphere; 2021 Apr; 6(2):. PubMed ID: 33827913
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Comparison Between Full-Length 16S rRNA Metabarcoding and Whole Metagenome Sequencing Suggests the Use of Either Is Suitable for Large-Scale Microbiome Studies.
    Rubiola S; Macori G; Civera T; Fanning S; Mitchell M; Chiesa F
    Foodborne Pathog Dis; 2022 Jul; 19(7):495-504. PubMed ID: 35819265
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs.
    Mizrahi-Man O; Davenport ER; Gilad Y
    PLoS One; 2013; 8(1):e53608. PubMed ID: 23308262
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets.
    F Escapa I; Huang Y; Chen T; Lin M; Kokaras A; Dewhirst FE; Lemon KP
    Microbiome; 2020 May; 8(1):65. PubMed ID: 32414415
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome.
    Kinoshita Y; Niwa H; Uchida-Fujii E; Nukada T
    Sci Rep; 2021 Jun; 11(1):11884. PubMed ID: 34088956
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Amplicon Sequencing of Single-Copy Protein-Coding Genes Reveals Accurate Diversity for Sequence-Discrete Microbiome Populations.
    Yang C; Su Q; Tang M; Luo S; Zheng H; Zhang X; Zhou X
    Microbiol Spectr; 2022 Apr; 10(2):e0210521. PubMed ID: 35416715
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 28.