2342 related articles for article (PubMed ID: 30357350)
1. The Pfam protein families database in 2019.
El-Gebali S; Mistry J; Bateman A; Eddy SR; Luciani A; Potter SC; Qureshi M; Richardson LJ; Salazar GA; Smart A; Sonnhammer ELL; Hirsh L; Paladin L; Piovesan D; Tosatto SCE; Finn RD
Nucleic Acids Res; 2019 Jan; 47(D1):D427-D432. PubMed ID: 30357350
[TBL] [Abstract][Full Text] [Related]
2. The Pfam protein families database: towards a more sustainable future.
Finn RD; Coggill P; Eberhardt RY; Eddy SR; Mistry J; Mitchell AL; Potter SC; Punta M; Qureshi M; Sangrador-Vegas A; Salazar GA; Tate J; Bateman A
Nucleic Acids Res; 2016 Jan; 44(D1):D279-85. PubMed ID: 26673716
[TBL] [Abstract][Full Text] [Related]
3. Pfam: The protein families database in 2021.
Mistry J; Chuguransky S; Williams L; Qureshi M; Salazar GA; Sonnhammer ELL; Tosatto SCE; Paladin L; Raj S; Richardson LJ; Finn RD; Bateman A
Nucleic Acids Res; 2021 Jan; 49(D1):D412-D419. PubMed ID: 33125078
[TBL] [Abstract][Full Text] [Related]
4. Comparison of protein repeat classifications based on structure and sequence families.
Paladin L; Tosatto SC
Biochem Soc Trans; 2015 Oct; 43(5):832-7. PubMed ID: 26517890
[TBL] [Abstract][Full Text] [Related]
5. A sequence family database built on ECOD structural domains.
Liao Y; Schaeffer RD; Pei J; Grishin NV
Bioinformatics; 2018 Sep; 34(17):2997-3003. PubMed ID: 29659718
[TBL] [Abstract][Full Text] [Related]
6. Allergens are distributed into few protein families and possess a restricted number of biochemical functions.
Radauer C; Bublin M; Wagner S; Mari A; Breiteneder H
J Allergy Clin Immunol; 2008 Apr; 121(4):847-52.e7. PubMed ID: 18395549
[TBL] [Abstract][Full Text] [Related]
7. RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures.
Paladin L; Bevilacqua M; Errigo S; Piovesan D; Mičetić I; Necci M; Monzon AM; Fabre ML; Lopez JL; Nilsson JF; Rios J; Menna PL; Cabrera M; Buitron MG; Kulik MG; Fernandez-Alberti S; Fornasari MS; Parisi G; Lagares A; Hirsh L; Andrade-Navarro MA; Kajava AV; Tosatto SCE
Nucleic Acids Res; 2021 Jan; 49(D1):D452-D457. PubMed ID: 33237313
[TBL] [Abstract][Full Text] [Related]
8. RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures.
Paladin L; Hirsh L; Piovesan D; Andrade-Navarro MA; Kajava AV; Tosatto SC
Nucleic Acids Res; 2017 Jan; 45(D1):D308-D312. PubMed ID: 27899671
[TBL] [Abstract][Full Text] [Related]
9. The Pfam protein families database.
Punta M; Coggill PC; Eberhardt RY; Mistry J; Tate J; Boursnell C; Pang N; Forslund K; Ceric G; Clements J; Heger A; Holm L; Sonnhammer EL; Eddy SR; Bateman A; Finn RD
Nucleic Acids Res; 2012 Jan; 40(Database issue):D290-301. PubMed ID: 22127870
[TBL] [Abstract][Full Text] [Related]
10. Pfam: clans, web tools and services.
Finn RD; Mistry J; Schuster-Böckler B; Griffiths-Jones S; Hollich V; Lassmann T; Moxon S; Marshall M; Khanna A; Durbin R; Eddy SR; Sonnhammer EL; Bateman A
Nucleic Acids Res; 2006 Jan; 34(Database issue):D247-51. PubMed ID: 16381856
[TBL] [Abstract][Full Text] [Related]
11. SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
Pandit SB; Gosar D; Abhiman S; Sujatha S; Dixit SS; Mhatre NS; Sowdhamini R; Srinivasan N
Nucleic Acids Res; 2002 Jan; 30(1):289-93. PubMed ID: 11752317
[TBL] [Abstract][Full Text] [Related]
12. Pfam 10 years on: 10,000 families and still growing.
Sammut SJ; Finn RD; Bateman A
Brief Bioinform; 2008 May; 9(3):210-9. PubMed ID: 18344544
[TBL] [Abstract][Full Text] [Related]
13. The challenge of increasing Pfam coverage of the human proteome.
Mistry J; Coggill P; Eberhardt RY; Deiana A; Giansanti A; Finn RD; Bateman A; Punta M
Database (Oxford); 2013; 2013():bat023. PubMed ID: 23603847
[TBL] [Abstract][Full Text] [Related]
14. EVEREST: automatic identification and classification of protein domains in all protein sequences.
Portugaly E; Harel A; Linial N; Linial M
BMC Bioinformatics; 2006 Jun; 7():277. PubMed ID: 16749920
[TBL] [Abstract][Full Text] [Related]
15. Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.
Russo ET; Laio A; Punta M
BMC Bioinformatics; 2021 Mar; 22(1):121. PubMed ID: 33711918
[TBL] [Abstract][Full Text] [Related]
16. Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.
Xu Q; Dunbrack RL
Bioinformatics; 2012 Nov; 28(21):2763-72. PubMed ID: 22942020
[TBL] [Abstract][Full Text] [Related]
17. Pfam: the protein families database.
Finn RD; Bateman A; Clements J; Coggill P; Eberhardt RY; Eddy SR; Heger A; Hetherington K; Holm L; Mistry J; Sonnhammer EL; Tate J; Punta M
Nucleic Acids Res; 2014 Jan; 42(Database issue):D222-30. PubMed ID: 24288371
[TBL] [Abstract][Full Text] [Related]
18. The Pfam protein families database.
Bateman A; Coin L; Durbin R; Finn RD; Hollich V; Griffiths-Jones S; Khanna A; Marshall M; Moxon S; Sonnhammer EL; Studholme DJ; Yeats C; Eddy SR
Nucleic Acids Res; 2004 Jan; 32(Database issue):D138-41. PubMed ID: 14681378
[TBL] [Abstract][Full Text] [Related]
19. The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.
Chiang Z; Vastermark A; Punta M; Coggill PC; Mistry J; Finn RD; Saier MH
Brief Bioinform; 2015 Sep; 16(5):865-72. PubMed ID: 25614388
[TBL] [Abstract][Full Text] [Related]
20. RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins.
Hirsh L; Paladin L; Piovesan D; Tosatto SCE
Nucleic Acids Res; 2018 Jul; 46(W1):W402-W407. PubMed ID: 29746699
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
